Related papers: Filtering ASVs/OTUs via Mutual Information-Based M…
Hyperspectral image is a substitution of more than a hundred images, called bands, of the same region. They are taken at juxtaposed frequencies. The reference image of the region is called Ground Truth map (GT). the problematic is how to…
Feature selection problems arise in a variety of applications, such as microarray analysis, clinical prediction, text categorization, image classification and face recognition, multi-label learning, and classification of internet traffic.…
As sequencing technologies become more affordable and genomic databases expand continuously, the reuse of publicly available sequencing data emerges as a powerful strategy for studying microbial pathogens. Indeed, raw sequencing reads…
The Normalized Mutual Information (NMI) has been widely used to evaluate the accuracy of community detection algorithms. However in this article we show that the NMI is seriously affected by systematic errors due to finite size of networks,…
A network is a composition of many communities, i.e., sets of nodes and edges with stronger relationships, with distinct and overlapping properties. Community detection is crucial for various reasons, such as serving as a functional unit of…
We use a Potts model community detection algorithm to accurately and quantitatively evaluate the hierarchical or multiresolution structure of a graph. Our multiresolution algorithm calculates correlations among multiple copies ("replicas")…
The reliability of controlled experiments, commonly referred to as "A/B tests," is often compromised by network interference, where the outcomes of individual units are influenced by interactions with others. Significant challenges in this…
The abundance of intestinal flora is closely related to human diseases, but diseases are not caused by a single gut microbe. Instead, they result from the complex interplay of numerous microbial entities. This intricate and implicit…
Most approaches to deep neural network compression via pruning either evaluate a filter's importance using its weights or optimize an alternative objective function with sparsity constraints. While these methods offer a useful way to…
This paper presents a novel mutual information (MI) matrix based method for fault detection. Given a $m$-dimensional fault process, the MI matrix is a $m \times m$ matrix in which the $(i,j)$-th entry measures the MI values between the…
Modern biomedical data mining requires feature selection methods that can (1) be applied to large scale feature spaces (e.g. `omics' data), (2) function in noisy problems, (3) detect complex patterns of association (e.g. gene-gene…
Community detection is one of the fundamental problems in the study of network data. Most existing community detection approaches only consider edge information as inputs, and the output could be suboptimal when nodal information is…
Molecular communication via diffusion (MCvD) is considered as one of the most feasible communication paradigms for nanonetworks, especially for bio-nanonetworks which are usually in water-rich biological environments. Two effects that…
Automated recognition and classification of bacteria species from microscopic images have significant importance in clinical microbiology. Bacteria classification is usually carried out manually by biologists using different shapes and…
In diffusion-based molecular communication, information transport is governed by diffusion through a fluid medium. The achievable data rates for these channels are very low compared to the radio-based communication system, since diffusion…
Community analysis is an important way to ascertain whether or not a complex system consists of sub-structures with different properties. In this paper, we give a two level community structure analysis for the SSCI journal system by most…
Pruning has emerged as the primary approach used to limit the resource requirements of large neural networks (NNs). Since the proposal of the lottery ticket hypothesis, researchers have focused either on pruning at initialization or after…
Community detection is key to understand the structure of complex networks. However, the lack of appropriate evaluation strategies for this specific task may produce biased and incorrect results that might invalidate further analyses or…
In today's data-driven world, the proliferation of publicly available information raises security concerns due to the information leakage (IL) problem. IL involves unintentionally exposing sensitive information to unauthorized parties via…
Recommendation and collaborative filtering systems are important in modern information and e-commerce applications. As these systems are becoming increasingly popular in the industry, their outputs could affect business decision making,…