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Unstable dynamics characterizes the evolution of most solid tumors. Because of an increased failure of maintaining genome integrity, a cumulative increase in the levels of gene mutation and loss is observed. Previous work suggests that…

Biological Physics · Physics 2015-06-18 Daniel R. Amor , Ricard V. Solé

Cancers follow a clonal Darwinian evolution, with fitter subclones replacing more quiescent cells, ultimately giving rise to macroscopic disease. High-throughput genomics provides the opportunity to investigate these processes and determine…

Quantitative Methods · Quantitative Biology 2014-10-07 Sakellarios Zairis , Hossein Khiabanian , Andrew J. Blumberg , Raul Rabadan

Tumors are defined by their intense proliferation, but sometimes cancer cells turn senescent and stop replicating. In the stochastic cancer model in which all cells are tumorigenic, senescence is seen as the result of random mutations,…

Tissues and Organs · Quantitative Biology 2013-08-29 Caterina A. M. La Porta , Stefano Zapperi , James P. Sethna

The problem of the onset and growth of solid tumour in homogeneous tissue is regarded using an approach based on local interaction between the tumoral and the sane tissue cells. The characteristic sizes and growth rates of spherical…

Cell Behavior · Quantitative Biology 2007-05-23 R. G. Khlebopros , V. A. Slepkov , V. G. Sukhovolsky , Y. V. Mironov , V. E. Fedorov , S. P. Gabuda

We argue that volumetric growth dynamics of a solid cancer depend on the tumor system's overall surface extension. While this at first may seem evident, to our knowledge, so far no theoretical argument has been presented explaining this…

Tissues and Organs · Quantitative Biology 2007-05-23 Thomas S. Deisboeck , Caterina Guiot , Pier Paolo Delsanto , Nicola Pugno

Cancer is a very complex phenomenon that involves many different scales and situations. In this paper we consider a free boundary problem describing the evolution of a tumor colony and we derive a new asymptotic model for tumor growth. We…

Analysis of PDEs · Mathematics 2025-04-15 Rafael Granero-Belinchón , Martina Magliocca

We give a very short introduction to discrete and continuum models for the evolutionary and spatial dynamics of cancer through two case studies: a model for the evolutionary dynamics of cancer cells under cytotoxic therapy and a model for…

Tissues and Organs · Quantitative Biology 2019-11-07 Tommaso Lorenzi , Fiona R. Macfarlane , Chiara Villa

This paper investigates cells proliferation dynamics in small tumor cell aggregates using an individual based model (IBM). The simulation model is designed to study the morphology of the cell population and of the cell lineages as well as…

Recently, there has been a resurgence of interest in rigorous algorithms for the inference of cancer progression from genomic data. The motivations are manifold: (i) growing NGS and single cell data from cancer patients, (ii) need for novel…

Machine Learning · Computer Science 2016-02-25 Daniele Ramazzotti

Cancer development is a multistep process often starting with a single cell in which a number of epigenetic and genetic alterations have accumulated thus transforming it into a tumor cell. The progeny of such a single benign tumor cell…

Tissues and Organs · Quantitative Biology 2022-09-21 Steffen Lange , Richard Mogwitz , Denis Hünniger , Anja Voss-Böhme

Heterogeneity is a hallmark of all cancers. Tumor heterogeneity is found at different levels -- interpatient, intrapatient, and intratumor heterogeneity. All of them pose challenges for clinical treatments. The latter two scenarios can also…

Soft Condensed Matter · Physics 2020-04-03 Xin Li , D. Thirumalai

Recent progress in microdissection and in DNA sequencing has enabled subsampling of multi-focal cancers in organs such as the liver in several hundred spots, helping to determine the pattern of mutations in each of these spots. This has led…

Populations and Evolution · Quantitative Biology 2018-01-04 Philip A. Ernst , Marek Kimmel , Monika Kurpas , Quan Zhou

Currently, most of the basic mechanisms governing tumor-immune system interactions, in combination with modulations of tumor-associated vasculature, are far from being completely understood. Here, we propose a mathematical model of…

Tissues and Organs · Quantitative Biology 2015-10-07 H. Hatzikirou , J. C. L. Alfonso , S. Muhle , C. Stern , S. Weiss , M. Meyer-Hermann

A small but growing number of people are finding interesting parallels between ecosystems as studied by ecologists (think of a Savanna or the Amazon rain forest or a Coral reef) and tumours1-3. The idea of viewing cancer from an ecological…

Tissues and Organs · Quantitative Biology 2013-05-13 David Basanta , Alexander R. A. Anderson

Mechanics and biochemical signaling are both often deregulated in cancer, leading to cancer cell phenotypes that exhibit increased invasiveness, proliferation, and survival. The dynamics and interactions of cytoskeletal components control…

Biological Physics · Physics 2018-07-27 Fabian Spill , Chris Bakal , Michael Mak

Tumors constitute a wide family of diseases kinetically characterized by the co-presence of multiple spatio-temporal scales. So, tumor cells ecologically interplay with other kind of cells, e.g. endothelial cells or immune system effectors,…

Computational Engineering, Finance, and Science · Computer Science 2012-08-21 Giulio Caravagna , Alex Graudenzi , Marco Antoniotti , Giancarlo Mauri , Alberto d'Onofrio

We consider a three-state model comprising tumor cells, effector cells and tumor detecting cells under the influence of noises. It is demonstrated that inevitable stochastic forces existing in all three cell species are able to suppress…

Tissues and Organs · Quantitative Biology 2011-07-05 Thomas Bose , Steffen Trimper

Tumor growth is a complex process characterized by uncontrolled cell proliferation and invasion of neighboring tissues. The understanding of these phenomena is of vital importance to establish appropriate diagnosis and therapeutic strategy…

Tissues and Organs · Quantitative Biology 2019-10-23 Miguel Martín-Landrove , Francisco Torres-Hoyos , Antonio Rueda-Toicen

Cancer cell mutations occur when cells undergo multiple cell divisions, and these mutations can be spontaneous or environmentally-induced. The mechanisms that promote and sustain these mutations are still not fully understood. This study…

Dynamical Systems · Mathematics 2021-10-27 Maher Alwuthaynani , Raluca Eftimie , Dumitru Trucu

Using a novel modeling approach based on the so-called environmental stress level (ESL), we develop a mathematical model to describe systematically the collective influence of oxygen concentration and stiffness of the extracellular matrix…

Cell Behavior · Quantitative Biology 2023-10-31 Sabrina Schönfeld , Laura Scarabosio , Alican Ozkan , Marissa Nichole Rylander , Christina Kuttler