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Single particle tracking allows probing how biomolecules interact physically with their natural environments. A fundamental challenge when analysing recorded single particle trajectories is the inverse problem of inferring the physical…

Data in tabular format is frequently occurring in real-world applications. Graph Neural Networks (GNNs) have recently been extended to effectively handle such data, allowing feature interactions to be captured through representation…

Machine Learning · Computer Science 2024-08-14 Amr Alkhatib , Sofiane Ennadir , Henrik Boström , Michalis Vazirgiannis

Graph neural networks (GNNs) are a type of deep learning models that are trained on graphs and have been successfully applied in various domains. Despite the effectiveness of GNNs, it is still challenging for GNNs to efficiently scale to…

Machine Learning · Computer Science 2023-08-28 Yingxia Shao , Hongzheng Li , Xizhi Gu , Hongbo Yin , Yawen Li , Xupeng Miao , Wentao Zhang , Bin Cui , Lei Chen

Traffic classification associates packet streams with known application labels, which is vital for network security and network management. With the rise of NAT, port dynamics, and encrypted traffic, it is increasingly challenging to obtain…

Machine Learning · Computer Science 2021-10-20 Bo Pang , Yongquan Fu , Siyuan Ren , Ye Wang , Qing Liao , Yan Jia

Graph retrieval based on subgraph isomorphism has several real-world applications such as scene graph retrieval, molecular fingerprint detection and circuit design. Roy et al. [35] proposed IsoNet, a late interaction model for subgraph…

Machine Learning · Computer Science 2025-10-28 Ashwin Ramachandran , Vaibhav Raj , Indrayumna Roy , Soumen Chakrabarti , Abir De

Liquid Argon Time Projection Chamber (LArTPC) detector technology offers a wealth of high-resolution information on particle interactions, and leveraging that information to its full potential requires sophisticated automated reconstruction…

Data Analysis, Statistics and Probability · Physics 2025-06-27 V Hewes , Adam Aurisano , Giuseppe Cerati , Jim Kowalkowski , Claire Lee , Wei-keng Liao , Daniel Grzenda , Kaushal Gumpula , Xiaohe Zhang

Hypergraphs are a powerful abstraction for representing higher-order interactions between entities of interest. To exploit these relationships in making downstream predictions, a variety of hypergraph neural network architectures have…

Machine Learning · Computer Science 2023-06-21 Yuxin Wang , Quan Gan , Xipeng Qiu , Xuanjing Huang , David Wipf

Graph Neural Network (GNN) is an emerging technique for graph-based learning tasks such as node classification. In this work, we reveal the vulnerability of GNN to the imbalance of node labels. Traditional solutions for imbalanced…

Machine Learning · Computer Science 2022-02-08 Xiaohe Li , Lijie Wen , Yawen Deng , Fuli Feng , Xuming Hu , Lei Wang , Zide Fan

Hadronic signals of new-physics origin at the Large Hadron Collider can remain hidden within the copiously produced hadronic jets. Unveiling such signatures require highly performant deep-learning algorithms. We construct a class of Graph…

High Energy Physics - Phenomenology · Physics 2022-02-11 Partha Konar , Vishal S. Ngairangbam , Michael Spannowsky

Efficient and accurate algorithms are necessary to reconstruct particles in the highly granular detectors anticipated at the High-Luminosity Large Hadron Collider and the Future Circular Collider. We study scalable machine learning models…

Data Analysis, Statistics and Probability · Physics 2024-07-17 Joosep Pata , Eric Wulff , Farouk Mokhtar , David Southwick , Mengke Zhang , Maria Girone , Javier Duarte

This paper presents a new Network Intrusion Detection System (NIDS) based on Graph Neural Networks (GNNs). GNNs are a relatively new sub-field of deep neural networks, which can leverage the inherent structure of graph-based data. Training…

Networking and Internet Architecture · Computer Science 2023-05-12 Wai Weng Lo , Siamak Layeghy , Mohanad Sarhan , Marcus Gallagher , Marius Portmann

Graph Neural Networks (GNNs) are effective for processing graph-structured data but face challenges with large graphs due to high memory requirements and inefficient sparse matrix operations on GPUs. Quantum Computing (QC) offers a…

Machine Learning · Computer Science 2025-11-04 Mikel Casals , Vasilis Belis , Elias F. Combarro , Eduard Alarcón , Sofia Vallecorsa , Michele Grossi

The recent introduction of Graph Neural Networks (GNNs) and their growing popularity in the past few years has enabled the application of deep learning algorithms to non-Euclidean, graph-structured data. GNNs have achieved state-of-the-art…

Machine Learning · Computer Science 2020-10-27 Tuomas P. Oikarinen , Daniel C. Hannah , Sohrob Kazerounian

Training deep graph neural networks (GNNs) poses a challenging task, as the performance of GNNs may suffer from the number of hidden message-passing layers. The literature has focused on the proposals of {over-smoothing} and…

Machine Learning · Statistics 2023-02-27 Yirui Liu , Xinghao Qiao , Liying Wang , Jessica Lam

Graph neural networks (GNNs) are widely used as surrogates for costly experiments and first-principles simulations to study the behavior of compounds at atomistic scale, and their architectural complexity is constantly increasing to enable…

Machine Learning · Computer Science 2026-05-04 Arindam Chowdhury , Massimiliano Lupo Pasini

The last few years have seen an increasing wave of attacks with serious economic and privacy damages, which evinces the need for accurate Network Intrusion Detection Systems (NIDS). Recent works propose the use of Machine Learning (ML)…

Cryptography and Security · Computer Science 2021-08-02 David Pujol-Perich , José Suárez-Varela , Albert Cabellos-Aparicio , Pere Barlet-Ros

The reconstruction of charged particle trajectories in tracking detectors is a key problem in the analysis of experimental data for high-energy and nuclear physics. The amount of data in modern experiments is so large that classical…

Graph representation learning has attracted much attention in supporting high quality candidate search at scale. Despite its effectiveness in learning embedding vectors for objects in the user-item interaction network, the computational…

Information Retrieval · Computer Science 2020-03-05 Qiaoyu Tan , Ninghao Liu , Xing Zhao , Hongxia Yang , Jingren Zhou , Xia Hu

This work addresses the accurate and efficient simulation of physical phenomena governed by parametric Partial Differential Equations (PDEs) characterized by varying boundary conditions, where parametric instances modify not only the…

Numerical Analysis · Mathematics 2026-03-10 Francesco Della Santa , Sandra Pieraccini , Maria Strazzullo

In high-energy particle collisions, the primary collision products usually decay further resulting in tree-like, hierarchical structures with a priori unknown multiplicity. At the stable-particle level all decay products of a collision form…

High Energy Physics - Phenomenology · Physics 2024-07-15 Emanuel Pfeffer , Michael Waßmer , Yee-Ying Cung , Roger Wolf , Ulrich Husemann