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Some high-dimensional data.sets can be modelled by assuming that there are many different linear constraints, each of which is Frequently Approximately Satisfied (FAS) by the data. The probability of a data vector under the model is then…

Machine Learning · Computer Science 2013-01-14 Geoffrey E. Hinton , Yee Whye Teh

Much work has been done on feature selection. Existing methods are based on document frequency, such as Chi-Square Statistic, Information Gain etc. However, these methods have two shortcomings: one is that they are not reliable for…

Machine Learning · Computer Science 2013-05-06 Deqing Wang , Hui Zhang , Rui Liu , Weifeng Lv

Selective sweeps are typically associated with a local reduction of genetic diversity around the adaptive site. However, selective sweeps can also quickly carry neutral mutations to observable population frequencies if they arise early in a…

Populations and Evolution · Quantitative Biology 2012-06-29 Philipp W. Messer , Richard A. Neher

Continuous-time birth-death-shift (BDS) processes are frequently used in stochastic modeling, with many applications in ecology and epidemiology. In particular, such processes can model evolutionary dynamics of transposable elements -…

Methodology · Statistics 2014-12-02 Jason Xu , Peter Guttorp , Midori Kato-Maeda , Vladimir N. Minin

Genetically identical cells in the same population can take on phenotypically variable states, leading to differentiated responses to external signals, such as nutrients and drug-induced stress. Many models and experiments have focused on a…

Molecular Networks · Quantitative Biology 2015-04-28 Thierry Mora , Aleksandra M. Walczak

Biological evolution depends on the passing down to subsequent generations of genetic information encoding beneficial traits, and on the removal of unfit individuals by a selection mechanism. However, selection acts on phenotypes, and is…

Populations and Evolution · Quantitative Biology 2026-05-01 Bastien Mallein , Francesco Paparella , Emmanuel Schertzer , Zsófia Talyigás

Evolutionary analyses of large populations commonly incorporate stochasticity through temporal variation in selection while treating genetic transmission as fixed. Much less attention has been given to stochasticity in transmission itself.…

Populations and Evolution · Quantitative Biology 2026-02-24 Elisa Heinrich-Mora , Marcus Feldman

We study the relationship between the frequency of a function and the speed at which a neural network learns it. We build on recent results that show that the dynamics of overparameterized neural networks trained with gradient descent can…

Machine Learning · Computer Science 2019-12-03 Ronen Basri , David Jacobs , Yoni Kasten , Shira Kritchman

Language change is a cultural evolutionary process in which variants of linguistic variables change in frequency through processes analogous to mutation, selection and genetic drift. In this work, we apply a recently-introduced method to…

Computation and Language · Computer Science 2023-08-22 Juan Guerrero Montero , Andres Karjus , Kenny Smith , Richard A. Blythe

Natural selection acts on traits at different scales, often with opposing consequences. This article identifies the particular forces that act at each scale and how those forces combine to determine the overall evolutionary outcome. A…

Populations and Evolution · Quantitative Biology 2025-10-30 Steven A. Frank

In this work, we conduct an in-depth analysis of two frequency-dependent methods for sound event detection (SED): FilterAugment and frequency dynamic convolution (FDY conv). The goal is to better understand their characteristics and…

Audio and Speech Processing · Electrical Eng. & Systems 2025-08-28 Hyeonuk Nam , Seong-Hu Kim , Deokki Min , Byeong-Yun Ko , Yong-Hwa Park

Stability and reproducibility are essential considerations in various applications of statistical methods. False Discovery Rate (FDR) control methods are able to control false signals in scientific discoveries. However, many FDR control…

Methodology · Statistics 2025-12-22 Jiajun Sun , Zhanrui Cai , Wei Zhong

One of the fundamental principles driving diversity or homogeneity in domains such as cultural differentiation, political affiliation, and product adoption is the tension between two forces: influence (the tendency of people to become…

Computer Science and Game Theory · Computer Science 2015-10-28 David Kempe , Jon Kleinberg , Sigal Oren , Aleksandrs Slivkins

Ecological interactions can dramatically alter evolutionary outcomes in complex communities. Yet, the framework of population genetics largely neglects interactions from a species-rich community. Here, we bridge this gap by using dynamical…

Populations and Evolution · Quantitative Biology 2026-04-16 Shing Yan Li , Zhijie Feng , Akshit Goyal , Pankaj Mehta

Phenotype-switching with and without sensing environment is a ubiquitous strategy of organisms to survive in fluctuating environment. Fitness of a population of organisms with phenotype-switching may be constrained and restricted by hidden…

Populations and Evolution · Quantitative Biology 2016-01-20 Tetsuya J. Kobayashi , Yuki Sughiyama

Motivated by the goals of dataset pruning and defect identification, a growing body of methods have been developed to score individual examples within a dataset. These methods, which we call "example difficulty scores", are typically used…

Machine Learning · Computer Science 2024-01-04 Devin Kwok , Nikhil Anand , Jonathan Frankle , Gintare Karolina Dziugaite , David Rolnick

Many experimental and field studies have shown that adaptation can occur very rapidly. Two qualitatively different modes of fast adaptation have been proposed: selective sweeps wherein large shifts in the allele frequencies occur at a few…

Populations and Evolution · Quantitative Biology 2018-10-19 Kavita Jain , Wolfgang Stephan

This paper explores the genotype-phenotype relationship. It outlines conditions under which the dependence of a quantitative trait on the genome might be predictable, based on measurement of a limited subset of genotypes. It uses the theory…

Quantitative Methods · Quantitative Biology 2022-03-15 Stephen Doro , Matthew A. Herman

The formation of sentences is a highly structured and history-dependent process. The probability of using a specific word in a sentence strongly depends on the 'history' of word-usage earlier in that sentence. We study a simple…

Physics and Society · Physics 2015-05-28 Stefan Thurner , Rudolf Hanel , Bo Liu , Bernat Corominas-Murtra

Molecular traits, such as gene expression levels or protein binding affinities, are increasingly accessible to quantitative measurement by modern high-throughput techniques. Such traits measure molecular functions and, from an evolutionary…

Populations and Evolution · Quantitative Biology 2013-11-15 Armita Nourmohammad , Torsten Held , Michael Lässig