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While functionality and correctness of code has traditionally been the main focus of computing educators, quality aspects of code are getting increasingly more attention. High-quality code contributes to the maintainability of software…

Software Engineering · Computer Science 2023-04-27 Hieke Keuning , Johan Jeuring , Bastiaan Heeren

Reproducibility, the ability to recompute results, and replicability, the chances other experimenters will achieve a consistent result, are two foundational characteristics of successful scientific research. Consistent findings from…

Applications · Statistics 2015-06-23 Jeffrey T. Leek , Roger D. Peng

The high incidence of irreproducible research has led to urgent appeals for transparency and equitable practices in open science. For the scientific disciplines that rely on computationally intensive analyses of large data sets, a granular…

Modern code review is a widely used technique employed in both industrial and open-source projects to improve software quality, share knowledge, and ensure adherence to coding standards and guidelines. During code review, developers may…

Software Engineering · Computer Science 2022-03-29 Eman Abdullah AlOmar , Moataz Chouchen , Mohamed Wiem Mkaouer , Ali Ouni

The evidence-based approach has increasingly been employed to synthesize empirical findings from the primary research in software engineering. Nevertheless, the reproducibility of evidence-based software engineering (EBSE) studies seems to…

Software Engineering · Computer Science 2021-03-03 Zheng Li

The reproducibility of scientific findings are an important hallmark of quality and integrity in research. The scientific method requires hypotheses to be subjected to the most crucial tests, and for the results to be consistent across…

Computers and Society · Computer Science 2019-09-11 Dustin Tanksley , Donald C. Wunsch

Duplicating one's own code makes it faster to write software. This expediency is particularly valuable for users of computational notebooks. Duplication allows notebook users to quickly test hypotheses and iterate over data. In this paper,…

Software Engineering · Computer Science 2020-05-29 Andreas Koenzen , Neil Ernst , Margaret-Anne Storey

Reproducibility of computational studies is a hallmark of scientific methodology. It enables researchers to build with confidence on the methods and findings of others, reuse and extend computational pipelines, and thereby drive scientific…

The availability of large-scale datasets, advanced architectures, and powerful computational resources have led to effective code models that automate diverse software engineering activities. The datasets usually consist of billions of…

Software Engineering · Computer Science 2024-01-15 Zhou Yang , Zhipeng Zhao , Chenyu Wang , Jieke Shi , Dongsun Kim , DongGyun Han , David Lo

In many fields of experimental science, papers that failed to replicate continue to be cited as a result of the poor discoverability of replication studies. As a first step to creating a system that automatically finds replication studies…

Digital Libraries · Computer Science 2023-11-28 Bob de Ruiter

Academic publications have been evaluated in terms of their impact on research communities based on many metrics, such as the number of citations. On the other hand, the impact of academic publications on industry has been rarely studied.…

Reproducibility is increasingly important to statistical research, but many details are often omitted from the published version of complex statistical analyses. A reader's comprehension is limited to what the author concludes, without…

Computation · Statistics 2015-04-17 Dana Udwin , Ben Baumer

As one of the most well-known programmer Q&A websites, Stack Overflow (i.e., SO) is serving tens of thousands of developers every day. Previous work has shown that many developers reuse the code snippets on SO when they find an answer (from…

Software Engineering · Computer Science 2022-04-28 Yuan Huang , Furen Xu , Haojie Zhou , Xiangping Chen , Xiaocong Zhou , Tong Wang

Proper citation is of great importance in academic writing for it enables knowledge accumulation and maintains academic integrity. However, citing properly is not an easy task. For published scientific entities, the ever-growing academic…

Digital Libraries · Computer Science 2022-10-20 Jialiang Lin , Yao Yu , Jiaxin Song , Xiaodong Shi

Software security vulnerabilities can lead to severe consequences, making early detection essential. Although code review serves as a critical defense mechanism against security flaws, relevant feedback remains scarce due to limited…

Software Engineering · Computer Science 2026-01-06 Zixiao Zhao , Yanjie Jiang , Hui Liu , Kui Liu , Lu Zhang

Computational methods have reshaped the landscape of modern biology. While the biomedical community is increasingly dependent on computational tools, the mechanisms ensuring open data, open software, and reproducibility are variably…

Other Quantitative Biology · Quantitative Biology 2020-07-28 Jaqueline J. Brito , Jun Li , Jason H. Moore , Casey S. Greene , Nicole A. Nogoy , Lana X. Garmire , Serghei Mangul

The accelerating pace of research on autoregressive generative models has produced thousands of papers, making manual literature surveys and reproduction studies increasingly impractical. We present a fully open-source, reproducible…

Information Retrieval · Computer Science 2025-08-07 Faruk Alpay , Bugra Kilictas , Hamdi Alakkad

Without sufficient information about research data practices occurring in a particular research organisation, there is a risk of mismatching research data service efforts with the needs of its researchers. This study describes how data…

Digital Libraries · Computer Science 2022-05-12 Antti Mikael Rousi

The use of machine learning (ML) methods for prediction and forecasting has become widespread across the quantitative sciences. However, there are many known methodological pitfalls, including data leakage, in ML-based science. In this…

Machine Learning · Computer Science 2022-07-15 Sayash Kapoor , Arvind Narayanan

Open source software development, particularly within institutions such as universities and research laboratories, is often decentralized and difficult to track. Although academic teams produce many impactful scientific tools, their…

Software Engineering · Computer Science 2026-02-27 Juanita Gomez , Emily Lovell , Stephanie Lieggi , Alvaro A. Cardenas , James Davis
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