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Reproducing computational research is often assumed to be as simple as rerunning the original code with provided data. In practice, missing packages, fragile file paths, version conflicts, or incomplete logic frequently cause analyses to…

Software Engineering · Computer Science 2026-04-24 Syed Mehtab Hussain Shah , Frank Hopfgartner , Arnim Bleier

Research must be reproducible in order to make an impact on science and to contribute to the body of knowledge in our field. Yet studies have shown that 70% of research from academic labs cannot be reproduced. In software engineering, and…

Software Engineering · Computer Science 2018-04-10 Clinton Woodson , Jane Huffman Hayes , Sarah Griffioen

One of the challenges in machine learning research is to ensure that presented and published results are sound and reliable. Reproducibility, that is obtaining similar results as presented in a paper or talk, using the same code and data…

Scientific research frequently involves the use of computational tools and methods. Providing thorough documentation, open-source code, and data -- the creation of reproducible computational research -- helps others understand a…

Digital Libraries · Computer Science 2022-09-14 Tim von Hahn , Chris K. Mechefske

Our analysis of recent AI4H publications reveals that, despite a trend toward utilizing open datasets and sharing modeling code, 74% of AI4H papers still rely on private datasets or do not share their code. This is especially concerning in…

Computers and Society · Computer Science 2026-03-05 John Wu , Zhenbang Wu , Jimeng Sun

Code review is a widely-used practice in software development companies to identify defects. Hence, code review has been included in many software engineering curricula at universities worldwide. However, teaching code review is still a…

Software Engineering · Computer Science 2021-02-04 Chun Yong Chong , Patanamon Thongtanunam , Chakkrit Tantithamthavorn

Reproducibility has been consistently identified as an important component of scientific research. Although there is a general consensus on the importance of reproducibility along with the other commonly used 'R' terminology (i.e.,…

Information Theory · Computer Science 2020-12-29 Anirudh Prabhu , Peter Fox

Reproducibility of computational research is critical for ensuring transparency, reliability and reusability. Challenges with computational reproducibility have been documented in several fields, but healthcare discrete-event simulation…

Other Quantitative Biology · Quantitative Biology 2025-09-17 Amy Heather , Thomas Monks , Alison Harper , Navonil Mustafee , Andrew Mayne

With the rapidly increasing capabilities and adoption of code agents for AI-assisted coding, safety concerns, such as generating or executing risky code, have become significant barriers to the real-world deployment of these agents. To…

Software Engineering · Computer Science 2024-11-13 Chengquan Guo , Xun Liu , Chulin Xie , Andy Zhou , Yi Zeng , Zinan Lin , Dawn Song , Bo Li

Bad statistics make research papers unreproducible and misleading. For the most part, the reasons for such misusage of numerical data have been found and addressed years ago by experts and proper practical solutions have been presented…

Other Statistics · Statistics 2020-10-26 Farzan Shenavarmasouleh , Hamid R. Arabnia

This paper presents results from the MSR 2021 Hackathon. Our team investigates files/projects that contain known security vulnerabilities and how widespread they are throughout repositories in open source software. These security…

Software Engineering · Computer Science 2021-03-24 David Reid , Kalvin Eng , Chris Bogart , Adam Tutko

Source code is essential for researchers to reproduce the methods and replicate the results of artificial intelligence (AI) papers. Some organizations and researchers manually collect AI papers with available source code to contribute to…

Software Engineering · Computer Science 2022-09-29 Jialiang Lin , Yingmin Wang , Yao Yu , Yu Zhou , Yidong Chen , Xiaodong Shi

Academic codes associated with research papers are valuable resources for scholars. In specialized fields outside computer science, code availability is often limited, making effective code retrieval essential. Google Scholar is a crucial…

Digital Libraries · Computer Science 2025-03-04 Shi-Shun Chen

The task of repository-level code completion is to continue writing the unfinished code based on a broader context of the repository. While for automated code completion tools, it is difficult to utilize the useful information scattered in…

Computation and Language · Computer Science 2023-10-23 Fengji Zhang , Bei Chen , Yue Zhang , Jacky Keung , Jin Liu , Daoguang Zan , Yi Mao , Jian-Guang Lou , Weizhu Chen

Many data science students and practitioners don't see the value in making time to learn and adopt good coding practices as long as the code "works". However, code standards are an important part of modern data science practice, and they…

Computation · Statistics 2023-08-29 Randall Pruim , Maria-Cristiana Gîrjău , Nicholas J. Horton

Software is used in critical applications in our day-to-day life and it is important to ensure its correctness. One popular approach to assess correctness is to evaluate software on tests. If a test fails, it indicates a fault in the…

Software Engineering · Computer Science 2025-04-01 Max Hort , Leon Moonen

Background. Reproducibility is essential to the scientific method, but reproduction is often a laborious task. Recent works have attempted to automate this process and relieve researchers of this workload. However, due to varying…

Computers and Society · Computer Science 2026-01-09 Thijs Snelleman , Peter Lundestad Lawrence , Holger H. Hoos , Odd Erik Gundersen

The drive for reproducibility in the computational sciences has provoked discussion and effort across a broad range of perspectives: technological, legislative/policy, education, and publishing. Discussion on these topics is not new, but…

Quantitative Methods · Quantitative Biology 2018-10-10 Daniel G. Hurley , Joseph Cursons , Matthew Faria , David M. Budden , Vijay Rajagopal , Edmund J. Crampin

Scientific advancement relies on the ability to share and reproduce results. When data analysis or calculations are carried out using software written by scientists there are special challenges around code versions, quality and code…

Software Engineering · Computer Science 2025-07-09 S. Lee , C. Myers , A. Yang , T. Zhang , S. J. L. Billinge

As reproducibility becomes a greater concern, conferences have largely converged to a strategy of asking reviewers to indicate whether code was attached to a submission. This is part of a larger trend of taking action based on assumed…

Machine Learning · Computer Science 2022-04-12 Edward Raff , Andrew L. Farris
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