Related papers: Notebook articles: towards a transformative publis…
Researchers and practitioners across many disciplines have recently adopted computational notebooks to develop, document, and share their scientific workflows - and the GIS community is no exception. This chapter introduces computational…
The act of sharing scientific knowledge is rapidly evolving away from traditional articles and presentations to the delivery of executable objects that integrate the data and computational details (e.g., scripts and workflows) upon which…
Recent trends within computational and data sciences show an increasing recognition and adoption of computational workflows as tools for productivity and reproducibility that also democratize access to platforms and processing know-how. As…
This open-source book represents our attempt to make deep learning approachable, teaching readers the concepts, the context, and the code. The entire book is drafted in Jupyter notebooks, seamlessly integrating exposition figures, math, and…
We propose an academic publishing system where research papers are stored in a network of data centres owned by university libraries and research institutions, and are interfaced with the academic community through a website. In our system,…
Context: Jupyter Notebook has emerged as a versatile tool that transforms how researchers, developers, and data scientists conduct and communicate their work. As the adoption of Jupyter notebooks continues to rise, so does the interest from…
The drive for reproducibility in the computational sciences has provoked discussion and effort across a broad range of perspectives: technological, legislative/policy, education, and publishing. Discussion on these topics is not new, but…
A foundational set of findable, accessible, interoperable, and reusable (FAIR) principles were proposed in 2016 as prerequisites for proper data management and stewardship, with the goal of enabling the reusability of scholarly data. The…
In this paper, we present an approach for extending the existing concept of nanopublications --- tiny entities of scientific results in RDF representation --- to broaden their application range. The proposed extension uses English sentences…
The way science is currently practiced shows conclusions but hides how they were reached. Researchers work privately, polish their results, publish a finished paper, and defend it. Errors are punished by retraction rather than corrected by…
Literature is the primary expression of scientific knowledge and an important source of research data. However, scientific knowledge expressed in narrative text documents is not inherently machine reusable. To facilitate knowledge reuse,…
In recent decades the analysis of data has become increasingly computational. Correspondingly, this has changed how scientific and statistical work is shared. For example, it is now commonplace for underlying analysis code and data to be…
The ongoing paradigm change in the scholarly publication system ('science is turning to e-science') makes it necessary to construct alternative evaluation criteria/metrics which appropriately take into account the unique characteristics of…
To enable materials databases supporting computational and experimental research, it is critical to develop platforms that both facilitate access to the data and provide the tools used to generate/analyze it - all while considering the…
Nanopublications are a Linked Data format for scholarly data publishing that has received considerable uptake in the last few years. In contrast to the common Linked Data publishing practice, nanopublications work at the granular level of…
In recent years, funding agencies and journals increasingly advocate for open science practices (e.g. data and method sharing) to improve the transparency, access, and reproducibility of science. However, quantifying these practices at…
Digital computational outputs are now ubiquitous in the research workflow and the way in which these data are stored and cataloged is becoming more standardized across fields of research. However, even with accessible data and code, the…
An increasing number of scientific publications are created in open and transparent peer review models: a submission is published first, and then reviewers are invited, or a submission is reviewed in a closed environment but then these…
Open Science is a recurrent topic in scientific discussion, and there is a current effort to make research more accessible to a broader audience. A focus on delivering research findings that are reproducible, or even re-usable has been…
In the extensive recommender systems literature, novelty and diversity have been identified as key properties of useful recommendations. However, these properties have received limited attention in the specific sub-field of research paper…