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Related papers: Checkpointing SPAdes for Metagenome Assembly: Tran…

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DMTCP (Distributed MultiThreaded CheckPointing) is a transparent user-level checkpointing package for distributed applications. Checkpointing and restart is demonstrated for a wide range of over 20 well known applications, including MATLAB,…

Distributed, Parallel, and Cluster Computing · Computer Science 2009-02-24 Jason Ansel , Kapil Arya , Gene Cooperman

This paper presents an in-depth examination of checkpoint-restart mechanisms in High-Performance Computing (HPC). It focuses on the use of Distributed MultiThreaded CheckPointing (DMTCP) in various computational settings, including both…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-30 Madan Timalsina , Lisa Gerhardt , Nicholas Tyler , Johannes P. Blaschke , William Arndt

Distributed applications running on a large cluster environment, such as the cloud instances will have shorter execution time. However, the application might suffer from sudden termination due to unpredicted computing node failures, thus…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-11-30 Basma Abdel Azeem , Manal Helal

While metagenomics has emerged as a technology of choice for analyzing bacterial populations, assembly of metagenomic data remains difficult thus stifling biological discoveries. metaSPAdes is a new assembler that addresses the challenge of…

Genomics · Quantitative Biology 2016-08-02 Sergey Nurk , Dmitry Meleshko , Anton Korobeynikov , Pavel Pevzner

High-performance computing (HPC) requires resilience techniques such as checkpointing in order to tolerate failures in supercomputers. As the number of nodes and memory in supercomputers keeps on increasing, the size of checkpoint data also…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-13 Kai Keller , Leonardo Bautista Gomez

Fault tolerance for the upcoming exascale generation has long been an area of active research. One of the components of a fault tolerance strategy is checkpointing. Petascale-level checkpointing is demonstrated through a new mechanism for…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-09-27 Jiajun Cao , Kapil Arya , Rohan Garg , Shawn Matott , Dhabaleswar K. Panda , Hari Subramoni , Jérôme Vienne , Gene Cooperman

The increasing performance requirements of modern applications place a significant burden on software-based packet processing. Most of today's software input/output accelerations achieve high performance at the expense of reserving CPU…

Networking and Internet Architecture · Computer Science 2021-05-24 Marco Faltelli , Giacomo Belocchi , Francesco Quaglia , Salvatore Pontarelli , Giuseppe Bianchi

Multipath TCP (MPTCP) has been widely used as an efficient way for communication in many applications. Data centers, smartphones, and network operators use MPTCP to balance the traffic in a network efficiently. MPTCP is an extension of TCP…

Networking and Internet Architecture · Computer Science 2023-09-19 Maisha Maliha , Golnaz Habibi , Mohammed Atiquzzaman

We present MLTCP, a technique to augment today's congestion control algorithms to accelerate DNN training jobs in shared GPU clusters. MLTCP enables the communication phases of jobs that compete for network bandwidth to interleave with each…

Networking and Internet Architecture · Computer Science 2024-02-16 Sudarsanan Rajasekaran , Sanjoli Narang , Anton A. Zabreyko , Manya Ghobadi

Edge computing enables latency-critical applications to process data close to end devices, yet task heterogeneity and limited resources pose significant challenges to efficient orchestration. This paper presents a measurement-driven,…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-01 Yongmin Zhang , Pengyu Huang , Mingyi Dong , Jing Yao

Process checkpoint-restart is a technology with great potential for use in HEP workflows. Use cases include debugging, reducing the startup time of applications both in offline batch jobs and the High Level Trigger, permitting job…

Computational Physics · Physics 2014-10-24 Kapil Arya , Gene Cooperman , Andrea Dotti , Peter Elmer

Distributed Stream Processing (DSP) focuses on the near real-time processing of large streams of unbounded data. To increase processing capacities, DSP systems are able to dynamically scale across a cluster of commodity nodes, ensuring a…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-03-05 Morgan Geldenhuys , Dominik Scheinert , Odej Kao , Lauritz Thamsen

Set intersection is the core in a variety of problems, e.g. frequent itemset mining and sparse boolean matrix multiplication. It is well-known that large speed gains can, for some computational problems, be obtained by using a graphics…

Data Structures and Algorithms · Computer Science 2011-02-07 Rasmus Resen Amossen , Rasmus Pagh

Modern Mixed-Criticality Systems (MCSs) rely on hardware heterogeneity to satisfy ever-increasing computational demands. However, most of the heterogeneous co-processors are designed to achieve high throughput, with their…

Hardware Architecture · Computer Science 2024-09-24 Jiapeng Guan , Ran Wei , Dean You , Yingquan Wang , Ruizhe Yang , Hui Wang , Zhe Jiang

This paper addresses the challenge of understanding the waiting dependencies between the threads and hardware resources required to complete a task. The objective is to improve software performance by detecting the underlying bottlenecks…

Software Engineering · Computer Science 2021-03-09 Naser Ezzati-Jivan , Quentin Fournier , Michel R. Dagenais , Abdelwahab Hamou-Lhadj

In robot planning, tasks can often be achieved through multiple options, each consisting of several actions. This work specifically addresses deadline constraints in task and motion planning, aiming to find a plan that can be executed…

Robotics · Computer Science 2024-10-10 Yoonchang Sung , Shahaf S. Shperberg , Qi Wang , Peter Stone

Large cloud companies manage dozens of datacenters across the globe connected using dedicated inter-datacenter networks. An important application of these networks is data replication which is done for purposes such as increased resiliency…

Networking and Internet Architecture · Computer Science 2017-07-19 Mohammad Noormohammadpour , Cauligi S. Raghavendra

Stream processing is a computing paradigm that supports real-time data processing for a wide variety of applications. At Meta, it's used across the company for various tasks such as deriving product insights, providing and improving user…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-09 Animesh Dangwal , Yufeng Jiang , Charlie Arnold , Jun Fan , Mohamed Bassem , Aish Rajagopal

Grid computing is a collection of computer resources that are gathered together from various areas to give computational resources such as storage, data or application services. This is to permit clients to access this huge measure of…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-05 Garba Aliyu , Kana A. F. D. , Abdullahi Mohammed , Idris Abdulmumin , Shehu Adamu , Fatsuma Jauro

High-performance computing (HPC) systems frequently experience congestion leading to significant application performance variation. However, the impact of congestion on application runtime differs from application to application depending…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-02-05 Archit Patke , Saurabh Jha , Haoran Qiu , Jim Brandt , Ann Gentile , Joe Greenseid , Zbigniew Kalbarczyk , Ravishankar Iyer
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