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Related papers: Checkpointing SPAdes for Metagenome Assembly: Tran…

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Over the past years, TCP has gone through numerous updates to provide performance enhancement under diverse network conditions. However, with respect to losses, little can be achieved with legacy TCP detection and recovery mechanisms. Both…

Networking and Internet Architecture · Computer Science 2018-07-31 Simone Ferlin , Stepan Kucera , Holger Claussen , Ozgu Alay

Deep neural network (DNN) training continues to scale rapidly in terms of model size, data volume, and sequence length, to the point where multiple machines are required to fit large models for training. Different distributed and parallel…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-08 Xinyu Lian , Sam Ade Jacobs , Lev Kurilenko , Masahiro Tanaka , Stas Bekman , Olatunji Ruwase , Minjia Zhang

MetaScope is a fast and accurate tool for analyzing (host-associated) metagenome datasets. Sequence alignment of reads against the host genome (if requested) and against microbial Genbank is performed using a new DNA aligner called SASS.…

Genomics · Quantitative Biology 2015-11-30 Benjamin Buchfink , Daniel H. Huson , Chao Xie

The Metaverse promises immersive, real-time experiences; however, meeting its stringent latency and resource demands remains a major challenge. Conventional optimization techniques struggle to respond effectively under dynamic edge…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-03 Sulaiman Muhammad Rashid , Ibrahim Aliyu , Jaehyung Park , Jinsul Kim

Serving Large Language Models (LLMs) is a GPU-intensive task where traditional autoscalers fall short, particularly for modern Prefill-Decode (P/D) disaggregated architectures. This architectural shift, while powerful, introduces…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-28 Rongzhi Li , Ruogu Du , Zefang Chu , Sida Zhao , Chunlei Han , Zuocheng Shi , Yiwen Shao , Huanle Han , Long Huang , Zherui Liu , Shufan Liu

In large-scale distributed file systems, efficient meta- data operations are critical since most file operations have to interact with metadata servers first. In existing distributed hash table (DHT) based metadata management systems, the…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-11-11 Peng Sun , Yonggang Wen , Ta Nguyen Binh Duong , Haiyong Xie

Edge computing has emerged as a pivotal technology, offering significant advantages such as low latency, enhanced data security, and reduced reliance on centralized cloud infrastructure. These benefits are crucial for applications requiring…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-24 Tomasz Szydlo , Viacheslav Horbanov , Devki Nandan Jha , Shashikant Ilager , Aleksander Slominski , Rajiv Ranjan

Deploying deep neural networks (DNNs) on resource-constrained mobile devices presents significant challenges, particularly in achieving real-time performance while simultaneously coping with limited computational resources and battery life.…

Networking and Internet Architecture · Computer Science 2025-09-24 Zekai Sun , Xiuxian Guan , Zheng Lin , Zihan Fang , Xiangming Cai , Zhe Chen , Fangming Liu , Heming Cui , Jie Xiong , Wei Ni , Chau Yuen

This paper considers the problem of resource allocation in stream processing, where continuous data flows must be processed in real time in a large distributed system. To maximize system throughput, the resource allocation strategy that…

Machine Learning · Computer Science 2019-11-21 Xiang Ni , Jing Li , Mo Yu , Wang Zhou , Kun-Lung Wu

The trend towards highly parallel multi-processing is ubiquitous in all modern computer architectures, ranging from handheld devices to large-scale HPC systems; yet many applications are struggling to fully utilise the multiple levels of…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-07-19 Michael Lange , Gerard Gorman , Michele Weiland , Lawrence Mitchell , Xiaohu Guo , James Southern

Hardware-enclaves that target complex CPU designs compromise both security and performance. Programs have little control over micro-architecture, which leads to side-channel leaks, and then have to be transformed to have worst-case control-…

Cryptography and Security · Computer Science 2020-07-16 Sarbartha Banerjee , Prakash Ramrakhyani , Shijia Wei , Mohit Tiwari

The increasing popularity of deep neural network (DNN) applications demands high computing power and efficient hardware accelerator architecture. DNN accelerators use a large number of processing elements (PEs) and on-chip memory for…

Machine Learning · Computer Science 2022-04-28 Binayak Tiwari , Mei Yang , Xiaohang Wang , Yingtao Jiang

When considering recurrent tasks in real-time systems, concurrent accesses to shared resources, can cause race conditions or data corruptions. Such a problem has been extensively studied since the 1990s, and numerous resource…

Operating Systems · Computer Science 2022-06-22 Junjie Shi , Jan Duy Thien Pham , Malte Münch , Jan Viktor Hafemeister , Jian-Jia Chen , Kuan-Hsun Chen

Recently, Multipath TCP (MPTCP) has been proposed as an alternative transport approach for datacenter networks. MPTCP provides the ability to split a flow into multiple paths thus providing better performance and resilience to failures.…

Networking and Internet Architecture · Computer Science 2016-08-31 Savvas Zannettou , Michael Sirivianos , Fragkiskos Papadopoulos

Machine learning inference is increasingly being executed locally on mobile and embedded platforms, due to the clear advantages in latency, privacy and connectivity. In this paper, we present approaches for online resource management in…

Computer Vision and Pattern Recognition · Computer Science 2021-05-11 Lei Xun , Long Tran-Thanh , Bashir M Al-Hashimi , Geoff V. Merrett

High-Performance Computing (HPC) applications need to checkpoint massive amounts of data at scale. Multi-level asynchronous checkpoint runtimes like VELOC (Very Low Overhead Checkpoint Strategy) are gaining popularity among application…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-07 Mikaila J. Gossman , Bogdan Nicolae , Jon C. Calhoun , Franck Cappello , Melissa C. Smith

Recent advances in Deep Neural Networks (DNN) and Edge Computing have made it possible to automatically analyze streams of videos from home/security cameras over hierarchical clusters that include edge devices, close to the video source, as…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-14 Tarek Elgamal , Klara Nahrstedt

Hardware accelerators such as GPUs are required for real-time, low-latency inference with Deep Neural Networks (DNN). However, due to the inherent limits to the parallelism they can exploit, DNNs often under-utilize the capacity of today's…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-04-27 Aditya Dhakal , Sameer G. Kulkarni , K. K. Ramakrishnan

Nowadays a wide range of applications is constrained by low-latency requirements that cloud infrastructures cannot meet. Multi-access Edge Computing (MEC) has been proposed as the reference architecture for executing applications closer to…

Software Engineering · Computer Science 2022-05-10 Luciano Baresi , Davide Yi Xian Hu , Giovanni Quattrocchi , Luca Terracciano

Training massive-scale deep learning models on datasets spanning tens of terabytes presents critical challenges in hardware utilization and training reproducibility. In this paper, we identify and resolve profound data-loading bottlenecks…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-04-24 Kashish Mittal , Di Yu , Roozbeh Ketabi , Arushi Arora , Brendon Lapp , Peng Zhang