Related papers: Extrusion of chromatin loops by a composite loop e…
We present the bare one-, two-, and three-loop form factors in massless Quantum Chromodynamics as linear combinations of finite master integrals. Using symbolic integration, we compute their $\epsilon$ expansions and thereby reproduce all…
Intracellular transport of large cargoes, such as organelles, vesicles or large proteins, is a complex dynamical process that involves the interplay of ATP-consuming molecular motors, cytoskeleton filaments and the viscoelastic cytoplasm.…
We explore and quantify the physical and biochemical mechanisms that may be relevant in the regulation of translation. After elongation and detachment from the 3' termination site of mRNA, parts of the ribosome machinery can diffuse back to…
The induction of the lac operon follows cooperative kinetics.The first mechanistic model of these kinetics is the de facto standard in the modeling literature (Yagil & Yagil, Biophys J, 11, 11-27, 1971). Yet, subsequent studies have shown…
The SMC complex, MukBEF, is important for chromosome organization and segregation in Escherichia coli. Fluorescently tagged MukBEF forms distinct spots (or 'foci') in the cell, where it is thought to carry out most of its chromosome…
One of the most important problems in development is how epigenetic domains can be first established, and then maintained, within cells. To address this question, we propose a framework which couples 3D chromatin folding dynamics, to a…
Results are presented for the nucleon isovector electromagnetic form factors using 11 ensembles generated by the MILC collaboration using the 2+1+1-flavors HISQ action. They span 4 lattice spacings $a \sim$ 0.06, 0.09, 0.12 and 0.15~fm and…
The differences of the ejection-image structures in the chromospheric lines and the coronal continuum are considered. The outer, more diffusive scattering envelope of the ejection seems to be produced by the excessive free electrons due to…
The insertion of HIV and other DNA elements within genomes underpins both genetic diversity and disease when unregulated. Most of these insertions are not random and occupy specific positions within the genome but the physical mechanisms…
Monolayers of transition metal dichalcogenides (TMDC) became one of the most studied nanostructures in the last decade. Combining two different TMDC monolayers results in a heterostructure whose properties can be individually tuned by the…
Loop formation in long molecules occurs many places in nature, from solutions of carbon nanotubes to polymers inside a cell. In this article, we review theoretical studies of the static and dynamic properties of polymer loops. For example,…
We show the existence of a high interrelation between the different loops that may appear in a DNA segment. Conformational changes in a chain segment caused by the formation of a particular loop may either promote or prevent the appearance…
The possibility of explaining shear flow dynamos by a magnetic shear-current (MSC) effect is examined via numerical simulations. Our primary diagnostics is the determination of the turbulent magnetic diffusivity tensor $\boldsymbol{\eta}$.…
Looped Transformers provide advantages in parameter efficiency, computational capabilities, and generalization for reasoning tasks. However, their expressive power regarding function approximation remains underexplored. In this paper, we…
We perform a loop-level analysis of charged-current (CC) processes involving light leptons and quarks within the Standard Model Effective Field Theory (SMEFT). This work is motivated by the high precision reached in experiment and Standard…
Metabolism displays striking and robust regularities in the forms of modularity and hierarchy, whose composition may be compactly described. This renders metabolic architecture comprehensible as a system, and suggests the order in which…
The cytoskeleton is an active composite of filamentous proteins that dictates diverse mechanical properties and processes in eukaryotic cells by generating forces and autonomously restructuring itself. Enzymatic motors that act on the…
Mechanics has an important role during morphogenesis, both in the generation of forces driving cell shape changes and in determining the effective material properties of cells and tissues. Drosophila dorsal closure (DC) has emerged as a…
We study the power spectrum of dark matter density fluctuations in the framework of the Effective Field Theory of Large Scale Structures (EFTofLSS) up to three loop orders. In principle, several counter-terms may be needed to handle the…
Molecular motors are involved in key transport processes inside actin-based cellular protrusions. The motors carry cargo proteins to the protrusion tip which participate in regulating the actin polymerization, and play a key role in…