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Automatic phenotyping is a task of identifying cohorts of patients that match a predefined set of criteria. Phenotyping typically involves classifying long clinical documents that contain thousands of tokens. At the same time, recent…

Computation and Language · Computer Science 2021-05-17 Xin Su , Timothy Miller , Xiyu Ding , Majid Afshar , Dmitriy Dligach

As a mental disorder progresses, it may affect brain structure, but brain function expressed in brain dynamics is affected much earlier. Capturing the moment when brain dynamics express the disorder is crucial for early diagnosis. The…

Image and Video Processing · Electrical Eng. & Systems 2019-11-19 Usman Mahmood , Md Mahfuzur Rahman , Alex Fedorov , Zening Fu , Sergey Plis

Natural language processing is heavily Anglo-centric, while the demand for models that work in languages other than English is greater than ever. Yet, the task of transferring a model from one language to another can be expensive in terms…

Computation and Language · Computer Science 2018-11-06 Sujay Kumar Jauhar , Michael Gamon , Patrick Pantel

Many healthcare applications are inherently multimodal, involving several physiological signals. As sensors for these signals become more common, improving machine learning methods for multimodal healthcare data is crucial. Pretraining…

Machine Learning · Computer Science 2024-10-23 Ching Fang , Christopher Sandino , Behrooz Mahasseni , Juri Minxha , Hadi Pouransari , Erdrin Azemi , Ali Moin , Ellen Zippi

Pre-trained language models have recently emerged as a powerful tool for fine-tuning a variety of language tasks. Ideally, when models are pre-trained on large amount of data, they are expected to gain implicit knowledge. In this paper, we…

Computation and Language · Computer Science 2023-06-22 Mohamad Ballout , Ulf Krumnack , Gunther Heidemann , Kai-Uwe Kühnberger

Federated learning enables many applications benefiting distributed and private datasets of a large number of potential data-holding clients. However, different clients usually have their own particular objectives in terms of the tasks to…

Machine Learning · Computer Science 2022-07-19 Cihat Keçeci , Mohammad Shaqfeh , Hayat Mbayed , Erchin Serpedin

Advancements in sensing and computing technologies, the development of human and computer interaction frameworks, big data storage capabilities, and the emergence of cloud storage and could computing have resulted in an abundance of data in…

Machine Learning · Computer Science 2020-07-07 Ramin Moradi , Katrina M. Groth

Self-supervised learning has emerged as a powerful approach for leveraging large-scale unlabeled data to improve model performance in various domains. In this paper, we explore masked self-supervised pre-training for text recognition…

Computer Vision and Pattern Recognition · Computer Science 2025-03-31 Martin Kišš , Michal Hradiš

This work investigates the unexplored usability of self-supervised representation learning in the direction of functional knowledge transfer. In this work, functional knowledge transfer is achieved by joint optimization of self-supervised…

Computer Vision and Pattern Recognition · Computer Science 2023-07-11 Prakash Chandra Chhipa , Muskaan Chopra , Gopal Mengi , Varun Gupta , Richa Upadhyay , Meenakshi Subhash Chippa , Kanjar De , Rajkumar Saini , Seiichi Uchida , Marcus Liwicki

Large, pre-trained representation models trained using self-supervised learning have gained popularity in various fields of machine learning because they are able to extract high-quality salient features from input data. As such, they have…

Audio and Speech Processing · Electrical Eng. & Systems 2023-06-16 Hejung Yang , Hong-Goo Kang

In human learning, it is common to use multiple sources of information jointly. However, most existing feature learning approaches learn from only a single task. In this paper, we propose a novel multi-task deep network to learn…

Computer Vision and Pattern Recognition · Computer Science 2017-11-27 Zhongzheng Ren , Yong Jae Lee

Pretrained Transformer based models finetuned on domain specific corpora have changed the landscape of NLP. However, training or fine-tuning these models for individual tasks can be time consuming and resource intensive. Thus, a lot of…

Learning time-series representations for discriminative tasks, such as classification and regression, has been a long-standing challenge in the healthcare domain. Current pre-training methods are limited in either unidirectional next-token…

Artificial Intelligence · Computer Science 2024-08-27 Ziyang Song , Qincheng Lu , He Zhu , David Buckeridge , Yue Li

Language models pretrained on text from a wide variety of sources form the foundation of today's NLP. In light of the success of these broad-coverage models, we investigate whether it is still helpful to tailor a pretrained model to the…

Computation and Language · Computer Science 2020-05-07 Suchin Gururangan , Ana Marasović , Swabha Swayamdipta , Kyle Lo , Iz Beltagy , Doug Downey , Noah A. Smith

Pre-trained language models have been shown to improve performance in many natural language tasks substantially. Although the early focus of such models was single language pre-training, recent advances have resulted in cross-lingual and…

Computation and Language · Computer Science 2021-04-22 Ozan Caglayan , Menekse Kuyu , Mustafa Sercan Amac , Pranava Madhyastha , Erkut Erdem , Aykut Erdem , Lucia Specia

Self-supervised learning has emerged as a powerful tool for pretraining deep networks on unlabeled data, prior to transfer learning of target tasks with limited annotation. The relevance between the pretraining pretext and target tasks is…

Computer Vision and Pattern Recognition · Computer Science 2024-04-09 Tianwei Zhang , Dong Wei , Mengmeng Zhu , Shi Gu , Yefeng Zheng

We compare sequential fine-tuning with a model for multi-task learning in the context where we are interested in boosting performance on two tasks, one of which depends on the other. We test these models on the FigLang2022 shared task which…

Computation and Language · Computer Science 2022-11-01 Irina Bigoulaeva , Rachneet Sachdeva , Harish Tayyar Madabushi , Aline Villavicencio , Iryna Gurevych

Team adaptation to new cooperative tasks is a hallmark of human intelligence, which has yet to be fully realized in learning agents. Previous work on multi-agent transfer learning accommodate teams of different sizes, heavily relying on the…

Artificial Intelligence · Computer Science 2022-03-10 Rongjun Qin , Feng Chen , Tonghan Wang , Lei Yuan , Xiaoran Wu , Zongzhang Zhang , Chongjie Zhang , Yang Yu

Phenotype-driven gene prioritization is a critical process in the diagnosis of rare genetic disorders for identifying and ranking potential disease-causing genes based on observed physical traits or phenotypes. While traditional approaches…

Quantitative Methods · Quantitative Biology 2024-04-04 Junyoung Kim , Jingye Yang , Kai Wang , Chunhua Weng , Cong Liu

Chemical representations derived from deep learning are emerging as a powerful tool in areas such as drug discovery and materials innovation. Currently, this methodology has three major limitations - the cost of representation generation,…

Chemical Physics · Physics 2018-09-18 Clyde Fare , Lukas Turcani , Edward O. Pyzer-Knapp