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The exponential growth of collected, processed, and shared data has given rise to concerns about individuals' privacy. Consequently, various laws and regulations have been established to oversee how organizations handle and safeguard data.…

Cryptography and Security · Computer Science 2023-12-20 Wenjun Lin , Jiahao Qian , Wenwen Liu , Lang Wu

The ethical and legal imperative to share research data without causing harm requires careful attention to privacy risks. While mounting evidence demonstrates that data sharing benefits science, legitimate concerns persist regarding the…

With the rise of cameras and smart sensors, humanity generates an exponential amount of data. This valuable information, including underrepresented cases like AI in medical settings, can fuel new deep-learning tools. However, data…

Computer Vision and Pattern Recognition · Computer Science 2023-12-19 Zikui Cai , Zhongpai Gao , Benjamin Planche , Meng Zheng , Terrence Chen , M. Salman Asif , Ziyan Wu

In the era of big data, there is an increasing need for healthcare providers, communities, and researchers to share data and collaborate to improve health outcomes, generate valuable insights, and advance research. The Health Insurance…

Cryptography and Security · Computer Science 2023-05-23 Kai Zhang , Xiaoqian Jiang

The need to remove specific student data from cognitive diagnosis (CD) models has become a pressing requirement, driven by users' growing assertion of their "right to be forgotten". However, existing CD models are largely designed without…

Machine Learning · Computer Science 2025-11-07 Mingliang Hou , Yinuo Wang , Teng Guo , Zitao Liu , Wenzhou Dou , Jiaqi Zheng , Renqiang Luo , Mi Tian , Weiqi Luo

Objective: Clinical notes contain information not present elsewhere, including drug response and symptoms, all of which are highly important when predicting key outcomes in acute care patients. We propose the automatic annotation of…

Computation and Language · Computer Science 2021-11-25 Jingqing Zhang , Luis Bolanos , Ashwani Tanwar , Julia Ive , Vibhor Gupta , Yike Guo

Genome-wide association studies (GWAS) are an essential tool in biomedical research for identifying genetic factors linked to health and disease. However, publicly releasing GWAS summary statistics poses well-recognized privacy risks,…

Quantitative Methods · Quantitative Biology 2025-12-05 Anupama Nandi , Seth Neel , Hyunghoon Cho

Many modern entity recognition systems, including the current state-of-the-art de-identification systems, are based on bidirectional long short-term memory (biLSTM) units augmented by a conditional random field (CRF) sequence optimizer.…

Computation and Language · Computer Science 2021-02-18 Kahyun Lee , Mehmet Kayaalp , Sam Henry , Özlem Uzuner

Motivation: State-of-the-art biomedical named entity recognition (BioNER) systems often require handcrafted features specific to each entity type, such as genes, chemicals and diseases. Although recent studies explored using neural network…

Information Retrieval · Computer Science 2018-10-09 Xuan Wang , Yu Zhang , Xiang Ren , Yuhao Zhang , Marinka Zitnik , Jingbo Shang , Curtis Langlotz , Jiawei Han

We have three contributions in this work: 1. We explore the utility of a stacked denoising autoencoder and a paragraph vector model to learn task-independent dense patient representations directly from clinical notes. To analyze if these…

Computation and Language · Computer Science 2018-07-05 Madhumita Sushil , Simon Šuster , Kim Luyckx , Walter Daelemans

This paper studies a novel privacy-preserving anonymization problem for pedestrian images, which preserves personal identity information (PII) for authorized models and prevents PII from being recognized by third parties. Conventional…

Computer Vision and Pattern Recognition · Computer Science 2022-07-26 Junwu Zhang , Mang Ye , Yao Yang

Large language models trained on clinical text risk exposing sensitive patient information, yet differential privacy (DP) methods often severely degrade the diagnostic accuracy needed for deployment. Despite rapid progress in DP…

Machine Learning · Computer Science 2025-11-20 Mathieu Dufour , Andrew Duncan

The CEGS N-GRID 2016 Shared Task 1 in Clinical Natural Language Processing focuses on the de-identification of psychiatric evaluation records. This paper describes two participating systems of our team, based on conditional random fields…

Computation and Language · Computer Science 2017-10-02 Zhipeng Jiang , Chao Zhao , Bin He , Yi Guan , Jingchi Jiang

Large language models pretrained on a huge amount of data capture rich knowledge and information in the training data. The ability of data memorization and regurgitation in pretrained language models, revealed in previous studies, brings…

Cryptography and Security · Computer Science 2023-12-06 Xinwei Wu , Junzhuo Li , Minghui Xu , Weilong Dong , Shuangzhi Wu , Chao Bian , Deyi Xiong

Biomedical named entity recognition (NER) presents unique challenges due to specialized vocabularies, the sheer volume of entities, and the continuous emergence of novel entities. Traditional NER models, constrained by fixed taxonomies and…

Computation and Language · Computer Science 2025-05-22 Anthony Yazdani , Ihor Stepanov , Douglas Teodoro

Supporting public health research and the public's situational awareness during a pandemic requires continuous dissemination of infectious disease surveillance data. Legislation, such as the Health Insurance Portability and Accountability…

Cryptography and Security · Computer Science 2022-02-28 J. Thomas Brown , Chao Yan , Weiyi Xia , Zhijun Yin , Zhiyu Wan , Aris Gkoulalas-Divanis , Murat Kantarcioglu , Bradley A. Malin

Leveraging medical record information in the era of big data and machine learning comes with the caveat that data must be cleaned and de-identified. Facilitating data sharing and harmonization for multi-center collaborations are…

Image and Video Processing · Electrical Eng. & Systems 2023-05-11 Adrienne Kline , Vinesh Appadurai , Yuan Luo , Sanjiv Shah

Clinicians spend a significant amount of time inputting free-form textual notes into Electronic Health Records (EHR) systems. Much of this documentation work is seen as a burden, reducing time spent with patients and contributing to…

Computation and Language · Computer Science 2018-08-09 Peter J. Liu

Ensuring the de-identification of medical imaging data is a critical step in enabling safe data sharing. This paper presents a hybrid de-identification framework designed to process Digital Imaging and Communications in Medicine (DICOM)…

Cryptography and Security · Computer Science 2025-09-03 Hamideh Haghiri , Rajesh Baidya , Stefan Dvoretskii , Klaus H. Maier-Hein , Marco Nolden

Diffusion-weighted magnetic resonance imaging (DWI) is the only noninvasive method for quantifying microstructure and reconstructing white-matter pathways in the living human brain. Fluctuations from multiple sources create significant…

Machine Learning · Computer Science 2020-11-04 Shreyas Fadnavis , Joshua Batson , Eleftherios Garyfallidis
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