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Related papers: Performance of Automatic De-identification Across …

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Protected health information (PHI) de-identification is critical for enabling the safe reuse of clinical notes, yet evaluating and comparing PHI de-identification models typically depends on costly, small-scale expert annotations. We…

Artificial Intelligence · Computer Science 2025-11-19 Guanchen Wu , Zuhui Chen , Yuzhang Xie , Carl Yang

Protecting patient privacy in clinical narratives is essential for enabling secondary use of healthcare data under regulations such as GDPR and HIPAA. While manual de-identification remains the gold standard, it is costly and slow,…

Cryptography and Security · Computer Science 2026-04-24 Michele Miranda , Xinlan Yan , Nishant Mishra , Rachel Murphy , Ameen Abu-Hanna , Sébastien Bratières , Iacer Calixto

Electronic Health Records (EHRs) have become the primary form of medical data-keeping across the United States. Federal law restricts the sharing of any EHR data that contains protected health information (PHI). De-identification, the…

Computation and Language · Computer Science 2021-03-26 Abdullah Ahmed , Adeel Abbasi , Carsten Eickhoff

Clinical free-text data offers immense potential to improve population health research such as richer phenotyping, symptom tracking, and contextual understanding of patient care. However, these data present significant privacy risks due to…

The objective of this study is to address the critical issue of de-identification of clinical reports in order to allow access to data for research purposes, while ensuring patient privacy. The study highlights the difficulties faced in…

Computation and Language · Computer Science 2023-03-24 Xavier Tannier , Perceval Wajsbürt , Alice Calliger , Basile Dura , Alexandre Mouchet , Martin Hilka , Romain Bey

The robust development of Electronic Health Records (EHRs) causes a significant growth in sharing EHRs for clinical research. However, such a sharing makes it difficult to protect patient's privacy. A number of automated de-identification…

Cryptography and Security · Computer Science 2012-11-19 Jie Qian , Nafees Qamar

Access to medical imaging and associated text data has the potential to drive major advances in healthcare research and patient outcomes. However, the presence of Protected Health Information (PHI) and Personally Identifiable Information…

Machine Learning · Statistics 2025-08-01 Kyle Naddeo , Nikolas Koutsoubis , Rahul Krish , Ghulam Rasool , Nidhal Bouaynaya , Tony OSullivan , Raj Krish

Use of medical data, also known as electronic health records, in research helps develop and advance medical science. However, protecting patient confidentiality and identity while using medical data for analysis is crucial. Medical data can…

Artificial Intelligence · Computer Science 2018-10-17 Vithya Yogarajan , Michael Mayo , Bernhard Pfahringer

Background: More than half (57%) of pharma clinical research spend is in support of clinical trials. One reason is that Electronic Health Record (EHR) systems and HIPAA privacy rules often limit how broadly patient information can be…

Quantitative Methods · Quantitative Biology 2018-07-03 Andrew J McMurry , Richen Zhang , Alex Foxman , Lawrence Reiter , Ronny Schnel , DeLeys Brandman

In the field of machine learning, domain-specific annotated data is an invaluable resource for training effective models. However, in the medical domain, this data often includes Personal Health Information (PHI), raising significant…

Computation and Language · Computer Science 2024-09-13 Tal Baumel , Andre Manoel , Daniel Jones , Shize Su , Huseyin Inan , Aaron , Bornstein , Robert Sim

De-identification of electronic health records (EHR) is a vital step towards advancing health informatics research and maximising the use of available data. It is a two-step process where step one is the identification of protected health…

Computers and Society · Computer Science 2020-02-18 Vithya Yogarajan , Bernhard Pfahringer , Michael Mayo

This study examines integrating EHRs and NLP with large language models (LLMs) to improve healthcare data management and patient care. It focuses on using advanced models to create secure, HIPAA-compliant synthetic patient notes for…

Computation and Language · Computer Science 2025-06-03 Yao-Shun Chuang , Atiquer Rahman Sarkar , Yu-Chun Hsu , Noman Mohammed , Xiaoqian Jiang

Objectives; The accumulation and usefulness of clinical data have increased with IT development. While using clinical data that needs to be identifiable to obtain meaningful information, it is essential to ensure that data is de-identified…

Cryptography and Security · Computer Science 2018-04-16 Jipmin Jung , Phillip Park , Jaedong Lee , Hyein Lee , Geonkook Lee , Hyosoung Cha

The digitization of healthcare has facilitated the sharing and re-using of medical data but has also raised concerns about confidentiality and privacy. HIPAA (Health Insurance Portability and Accountability Act) mandates removing…

Exploiting natural language processing in the clinical domain requires de-identification, i.e., anonymization of personal information in texts. However, current research considers de-identification and downstream tasks, such as concept…

Computation and Language · Computer Science 2020-05-20 Lukas Lange , Heike Adel , Jannik Strötgen

Privacy is a human right that sustains patient-provider trust. Clinical notes capture a patient's private vulnerability and individuality, which are used for care coordination and research. Under HIPAA Safe Harbor, these notes are…

Computers and Society · Computer Science 2026-02-10 Lavender Y. Jiang , Xujin Chris Liu , Kyunghyun Cho , Eric K. Oermann

Clinical notes, which can be embedded into electronic medical records, document patient care delivery and summarize interactions between healthcare providers and patients. These clinical notes directly inform patient care and can also…

Computation and Language · Computer Science 2022-03-25 Suzanna Schmeelk , Martins Samuel Dogo , Yifan Peng , Braja Gopal Patra

De-identification of clinical text remains essential for secondary use of electronic health records (EHRs), yet public benchmarks such as i2b2 2006/2014 are over a decade old and lack the semantic and demographic diversity of modern…

Computation and Language · Computer Science 2026-05-06 Jose D. Posada , David Love , Somalee Datta , Priya Desai

Objective: To comparatively evaluate several transformer model architectures at identifying protected health information (PHI) in the i2b2/UTHealth 2014 clinical text de-identification challenge corpus. Methods: The i2b2/UTHealth 2014…

Computation and Language · Computer Science 2022-04-15 Christopher Meaney , Wali Hakimpour , Sumeet Kalia , Rahim Moineddin

Sharing clinical research data is key for increasing the pace of medical discoveries that improve human health. However, concern about study participants' privacy, confidentiality, and safety is a major factor that deters researchers from…