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Related papers: Site-Selective Dynamics of Azidolysozyme

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Azido-modified alanine residues (AlaN$_3$) are environment-sensitive, minimally invasive infrared probes for the site-specific investigation of protein structure and dynamics. Here, the capability of the label is investigated to query…

Biological Physics · Physics 2024-06-19 Seyedeh Maryam Salehi , Markus Meuwly

The changes in the local and global dynamics of azide-labelled Lysozyme compared with that of the wild type protein are quantitatively assessed for all alanine residues along the polypeptide chain. Although attaching -N$_3$ to alanine…

Chemical Physics · Physics 2021-12-02 Seyedeh Maryam Salehi , Markus Meuwly

The dynamics of lysozyme is probed by attaching -SCN to all alanine-residues. The 1-dimensional infrared spectra exhibit frequency shifts in the position of the maximum absorption by 4 cm$^{-1}$ which is consistent with experiments in…

Chemical Physics · Physics 2024-04-30 Sena Aydin , Seyedeh Maryam Salehi , Kai Töpfer , Markus Meuwly

The protein dynamical transition is investigated as a function of protein structure using terahertz time domain spectroscopy (THz-TDS). Measurements performed for native state and denatured hen egg white lysozyme (HEWL) show that protein…

Biological Physics · Physics 2008-07-23 Yunfen He , Andrea G. Markelz

The structural, electronic, optical and vibrational properties of LiN$_3$ under high pressure have been studied using plane wave pseudopotentials within the generalized gradient approximation for the exchange and correlation functional. The…

Materials Science · Physics 2013-11-07 K. Ramesh Babu , Ch. Bheema Lingam , Surya P. Tewari , G. Vaitheeswaran

The electronic structure and the anisotropy of the Al - N {\pi} and {\sigma} chemical bonding of wurtzite AlN has been investigated by bulk-sensitive total fluorescence yield absorption and soft x-ray emission spectroscopies. The measured N…

Materials Science · Physics 2011-12-30 M. Magnuson , M. Mattesini , C. Höglund , J. Birch , L. Hultman

We have investigated the effect of hydrostatic pressure and temperature on phase stability of hydro-nitrogen solids using dispersion corrected Density Functional Theory calculations. From our total energy calculations, Ammonium Azide (AA)…

Materials Science · Physics 2015-11-24 N. Yedukondalu , G. Vaitheeswaran , P. Anees , M. C. Valsakumar

We study by Small Angle Neutron Scattering (SANS) the structure of Hyaluronan -Lysozyme complexes. Hyaluronan (HA) is a polysaccharide of 9 nm intrinsic persistence length that bears one negative charge per disaccharide monomer (Mmol =…

Biological Physics · Physics 2012-10-04 François Boué , Eric Buhler , Fabrice Cousin , Isabelle Grillo , Isabelle Morfin

GaN/AlN nanowire heterostructures can display photoluminescence (PL) decay times on the order of microseconds that persist up to room temperature. Doping the GaN nanodisk insertions with Ge can reduce these PL decay times by two orders of…

Mesoscale and Nanoscale Physics · Physics 2015-05-28 M. Beeler , C. B. Lim , P. Hille , J. Bleuse , J. Schörmann , M. de la Mata , J. Arbiol , M. Eickhoff , E. Monroy

Despite being used for decades as stabilizers, amino acids (AAs) remain mysterious components of many medical and biological formulations. Hypotheses on their role vary ranging from hydrotropic to protein-specific effects (stabilization…

The effects of static electric field on the dynamics of lysozyme and its hydration water have been investigated by means of incoherent quasi-elastic neutron scattering (QENS). Measurements were performed on lysozyme samples, hydrated…

Soft Condensed Matter · Physics 2013-12-09 P. M. Favi , Q. Zhang , H. O'Neill , E. Mamontov , S. O. Diallo

While allostery is of paramount importance for protein regulation, the underlying dynamical process of ligand (un)binding at one site, resulting time evolution of the protein structure, and change of the binding affinity at a remote site is…

We report density functional theory calculations on the crystal structure, elastic, lattice dynamics and electronic properties of iso-structural layered monoclinic alkali azides, LiN3 and NaN3. The effect of van der Waals interactions on…

Materials Science · Physics 2013-11-04 K. Ramesh Babu , G. Vaitheeswaran

Measurements of chain conformation in proteins/polyelectrolytes complexes (lysozyme and PSSNa) show that the crossover observed between an open structure -a chain network crosslinked by the proteins, and a globular one - dense globules of ~…

Soft Condensed Matter · Physics 2009-03-31 Jérémie Gummel , Fabrice Cousin , François Boué

Interactions between actin, an anionic polyelectrolyte, and lysozyme, a cationic globular protein, have been examined using a combination of synchrotron small-angle x-ray scattering and molecular dynamics simulations. Lysozyme initially…

Recent advances in microelectromechanical systems often require multifunctional materials, which are designed so as to optimize more than one property. Using density functional theory calculations for alloyed nitride systems, we illustrate…

Materials Science · Physics 2017-10-10 Sukriti Manna , Geoff L. Brennecka , Vladan Stevanović , Cristian V. Ciobanu

By use of the recurrent relation approach (RRA) we study the microscopic dynamics of liquid aluminium at T=973 K and develop a theoretical model which satisfies all the corresponding sum rules. The investigation covers the inelastic…

Disordered Systems and Neural Networks · Physics 2015-06-25 A. V. Mokshin , R. M. Yulmetyev , R. M. Khusnutdinoff , P. Hänggi

We revisit the associating lattice gas~(ALG) introduced by Henriques \textit{et al.} [PRE 71, 031504 (2005)] in its symmetric version. In this model, defined on the triangular lattice, interaction between molecules occupying…

Statistical Mechanics · Physics 2021-12-16 Ingrid Ibagon , A. P. Furlan , T. J. Oliveira , Ronald Dickman

The plasma deposition wall coated composite of ZnO and {\alpha}-Fe2O3 (ZF-W) after exposure to ~ 2000 {\deg}C, mostly considered as waste-materials and cleaned out from the deposition unit, was subjected to anneal at 300, 500 and 1000…

Wurtzite GaN is a promising material for applications in photoconductive THz radiation sources. For this purpose, the photogenerated charge carriers lifetime of the order of tenths of picoseconds is required. A controllable lifetime…

Materials Science · Physics 2026-01-21 Andrey Sarikov , Ihor Kupchak
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