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We present a data-driven generative framework for synthesizing blood vessel 3D geometry. This is a challenging task due to the complexity of vascular systems, which are highly variating in shape, size, and structure. Existing model-based…

Computer Vision and Pattern Recognition · Computer Science 2025-05-20 Paula Feldman , Miguel Fainstein , Viviana Siless , Claudio Delrieux , Emmanuel Iarussi

Cosmological shock waves are essential to understanding the formation of cosmological structures. To study them, scientists run computationally expensive high-resolution 3D hydrodynamic simulations. Interpreting the simulation results is…

Instrumentation and Methods for Astrophysics · Physics 2022-11-16 Max Lamparth , Ludwig Böss , Ulrich Steinwandel , Klaus Dolag

Patient-specific computational modeling is a popular, non-invasive method to answer medical questions. Medical images are used to extract geometric domains necessary to create these models, providing a predictive tool for clinicians.…

We present DeepVesselNet, an architecture tailored to the challenges faced when extracting vessel networks or trees and corresponding features in 3-D angiographic volumes using deep learning. We discuss the problems of low execution speed…

Computer Vision and Pattern Recognition · Computer Science 2019-08-14 Giles Tetteh , Velizar Efremov , Nils D. Forkert , Matthias Schneider , Jan Kirschke , Bruno Weber , Claus Zimmer , Marie Piraud , Bjoern H. Menze

The motivation of our work is to present a new visualization-guided computing paradigm to combine direct 3D volume processing and volume rendered clues for effective 3D exploration such as extracting and visualizing microstructures in-vivo.…

Graphics · Computer Science 2020-09-15 Yifan Wang , Guoli Yan , Haikuan Zhu , Sagar Buch , Ying Wang , Ewart Mark Haacke , Jing Hua , Zichun Zhong

Acquiring plausible pathways on high-dimensional structural distributions is beneficial in several domains. For example, in the drug discovery field, a protein conformational pathway, i.e. a highly probable sequence of protein structural…

Quantitative Methods · Quantitative Biology 2025-06-04 Ziyad Oulhaj , Yoshiyuki Ishii , Kento Ohga , Kimihiro Yamazaki , Mutsuyo Wada , Yuhei Umeda , Takashi Kato , Yuichiro Wada , Hiroaki Kurihara

We present a unified framework for 3D geometric abstraction using a single continuous 4D wire, parameterized as a B-spline with spatial coordinates and variable width $(x,y,z,w)$. Existing approaches typically represent shapes as…

Computer Vision and Pattern Recognition · Computer Science 2026-05-13 Dong-Yi Wu , Tong-Yee Lee

Functional 3D scene graphs offer a versatile and flexible representation for 3D scene understanding and robotic manipulation, defined by object nodes, interactive elements, and functional relationship edges. However, their potential remains…

Automatic blood vessel extraction from 3D medical images is crucial for vascular disease diagnoses. Existing methods based on convolutional neural networks (CNNs) may suffer from discontinuities of extracted vessels when segmenting such…

Image and Video Processing · Electrical Eng. & Systems 2020-12-15 Jiafa He , Chengwei Pan , Can Yang , Ming Zhang , Yang Wang , Xiaowei Zhou , Yizhou Yu

Delineating 3D blood vessels is essential for clinical diagnosis and treatment, however, is challenging due to complex structure variations and varied imaging conditions. Supervised deep learning has demonstrated its superior capacity in…

Image and Video Processing · Electrical Eng. & Systems 2023-02-08 Huai Chen , Xiuying Wang , Lisheng Wang

Reconstructing the intricate local morphology of neurons and their long-range projecting axons can address many connectivity related questions in neuroscience. The main bottleneck in connectomics pipelines is correcting topological errors,…

Computer Vision and Pattern Recognition · Computer Science 2025-03-05 Anna Grim , Jayaram Chandrashekar , Uygar Sumbul

Routing optimization is a relevant problem in many contexts. Solving directly this type of optimization problem is often computationally unfeasible. Recent studies suggest that one can instead turn this problem into one of solving a…

Physics and Society · Physics 2020-12-11 Diego Baptista , Daniela Leite , Enrico Facca , Mario Putti , Caterina De Bacco

The rapid advances in 3D scanning and acquisition techniques have given rise to the explosive increase of volumetric digital models in recent years. This dissertation systematically trailblazes a novel volumetric modeling framework to…

Graphics · Computer Science 2013-08-06 Bo Li

Automatic extraction of liver and tumor from CT volumes is a challenging task due to their heterogeneous and diffusive shapes. Recently, 2D and 3D deep convolutional neural networks have become popular in medical image segmentation tasks…

Computer Vision and Pattern Recognition · Computer Science 2020-12-14 Qiangguo Jin , Zhaopeng Meng , Changming Sun , Leyi Wei , Ran Su

Recently, arbitrary-scale point cloud upsampling mechanism became increasingly popular due to its efficiency and convenience for practical applications. To achieve this, most previous approaches formulate it as a problem of surface…

Computer Vision and Pattern Recognition · Computer Science 2024-03-11 Hang Du , Xuejun Yan , Jingjing Wang , Di Xie , Shiliang Pu

Analyzing human vasculature and vessel-like, tubular structures, such as airways, is crucial for disease diagnosis and treatment. Current methods often rely on small sub-regions or simplified tree-like structures, rendering analysis of…

Computer Vision and Pattern Recognition · Computer Science 2026-05-05 Chinmay Prabhakar , Bastian Wittmann , Paul Büschl , Hongwei Bran Li , Bjoern Menze , Suprosanna Shit

Ultrasound is well-established as an imaging modality for diagnostic and interventional purposes. However, the image quality varies with operator skills as acquiring and interpreting ultrasound images requires extensive training due to the…

Vessel segmentation is widely used to help with vascular disease diagnosis. Vessels reconstructed using existing methods are often not sufficiently accurate to meet clinical use standards. This is because 3D vessel structures are highly…

Image and Video Processing · Electrical Eng. & Systems 2023-01-09 Gangming Zhao , Kongming Liang , Chengwei Pan , Fandong Zhang , Xianpeng Wu , Xinyang Hu , Yizhou Yu

We present a new algorithm to quickly generate high-performance GPU implementations of complex imaging and vision pipelines, directly from high-level Halide algorithm code. It is fully automatic, requiring no schedule templates or…

Programming Languages · Computer Science 2023-08-29 Luke Anderson , Andrew Adams , Karima Ma , Tzu-Mao Li , Tian Jin , Jonathan Ragan-Kelley

Graphs, consisting of vertices and edges, are vital for representing complex relationships in fields like social networks, finance, and blockchain. Visualizing these graphs helps analysts identify structural patterns, with readability…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-11-18 Sanggeon Yun