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Cardiovascular magnetic resonance imaging is emerging as a crucial tool to examine cardiac morphology and function. Essential to this endeavour are anatomical 3D surface and volumetric meshes derived from CMR images, which facilitate…

Image and Video Processing · Electrical Eng. & Systems 2025-05-20 Nicolás Gaggion , Benjamin A. Matheson , Yan Xia , Rodrigo Bonazzola , Nishant Ravikumar , Zeike A. Taylor , Diego H. Milone , Alejandro F. Frangi , Enzo Ferrante

Previous work has suggested that the structural restrictions of graphs from classes of bounded expansion--locally dense pockets in a globally sparse graph--naturally coincide with common properties of real-world networks such as clustering…

Data Structures and Algorithms · Computer Science 2018-04-24 Michael P. O'Brien , Blair D. Sullivan

Graph analytics are at the heart of a broad range of applications such as drug discovery, page ranking, and recommendation systems. When graph size exceeds memory size, out-of-core graph processing is needed. For the widely used external…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-12 Kiran Kumar Matam , Hanieh Hashemi , Murali Annavaram

Modern real-time Structural Health Monitoring systems can generate a considerable amount of information that must be processed and evaluated for detecting early anomalies and generating prompt warnings and alarms about the civil…

Networking and Internet Architecture · Computer Science 2022-03-11 Amirhossein Moallemi , Alessio Burrello , Davide Brunelli , Luca Benini

Graph streams are rapidly evolving sequences of edges that convey continuously changing relationships among entities, playing a crucial role in domains such as networking, finance, and cybersecurity. Their massive scale and high dynamism…

Databases · Computer Science 2026-02-18 Boyan Wang , Zhuochen Fan , Dayu Wang , Fangcheng Fu , Zeyu Luan , Lei Zou , Qing Li , Tong Yang

This paper provides theoretical and computational developments in statistical shape analysis of shape graphs, and demonstrates them using analysis of complex data from retinal blood-vessel (RBV) networks. The shape graphs are represented by…

Methodology · Statistics 2022-11-29 Aditi Basu Bal , Xiaoyang Guo , Tom Needham , Anuj Srivastava

The concept of robustness of regulatory networks has been closely related to the nature of the interactions among genes, and the capability of pattern maintenance or reproducibility. Defining this robustness property is a challenging task,…

Molecular Networks · Quantitative Biology 2007-10-24 Madalena Chave , Eduardo D. Sontag , Anirvan M. Sengupta

With the emergence of graph databases, the task of frequent subgraph discovery has been extensively addressed. Although the proposed approaches in the literature have made this task feasible, the number of discovered frequent subgraphs is…

Databases · Computer Science 2013-08-16 Wajdi Dhifli , Mohamed Moussaoui , Rabie Saidi , Engelbert Mephu Nguifo

This work is concerned with a representation of shapes that disentangles fine, local and possibly repeating geometry, from global, coarse structures. Achieving such disentanglement leads to two unrelated advantages: i) a significant…

Computer Vision and Pattern Recognition · Computer Science 2022-04-06 Luca Morreale , Noam Aigerman , Paul Guerrero , Vladimir G. Kim , Niloy J. Mitra

Achieving invariance to nuisance transformations is a fundamental challenge in the construction of robust and reliable vision systems. Existing approaches to invariance scale exponentially with the dimension of the family of…

Computer Vision and Pattern Recognition · Computer Science 2022-03-11 Sam Buchanan , Jingkai Yan , Ellie Haber , John Wright

Convolutional Neural Networks have dramatically improved in recent years, surpassing human accuracy on certain problems and performance exceeding that of traditional computer vision algorithms. While the compute pattern in itself is…

Computer Vision and Pattern Recognition · Computer Science 2018-07-10 Michaela Blott , Thomas B. Preusser , Nicholas Fraser , Giulio Gambardella , Kenneth OBrien , Yaman Umuroglu , Miriam Leeser

Graph neural networks have emerged as a powerful tool for learning spatiotemporal interactions. However, conventional approaches often rely on predefined graphs, which may obscure the precise relationships being modeled. Additionally,…

Machine Learning · Computer Science 2025-02-21 Jeehong Kim , Minchan Kim , Jaeseong Ju , Youngseok Hwang , Wonhee Lee , Hyunwoo Park

This paper describes a scalable active learning pipeline prototype for large-scale brain mapping that leverages high performance computing power. It enables high-throughput evaluation of algorithm results, which, after human review, are…

Understanding the structure of the brain, and how it changes with time and disease, is a core goal of structural neuroimaging. Contemporary approaches to structural brain analysis are dominated by voxel-wise, mass-univariate methods such as…

Algebraic Topology · Mathematics 2026-04-28 Donato Quiccione , Mariam Pirashvili , Nathan Broomhead , Sean J. Fallon

Shape graphs are complex geometrical structures commonly found in biological and anatomical systems. A shape graph is a collection of nodes, some connected by curvilinear edges with arbitrary shapes. Their high complexity stems from the…

Computation · Statistics 2024-09-17 Benjamin Beaudett , Anuj Srivastava

Large datasets represented by multidimensional data point clouds often possess non-trivial distributions with branching trajectories and excluded regions, with the recent single-cell transcriptomic studies of developing embryo being notable…

Current volumetric biomedical foundation models struggle to generalize as public 3D datasets are small and do not cover the broad diversity of medical procedures, conditions, anatomical regions, and imaging protocols. We address this by…

Computer Vision and Pattern Recognition · Computer Science 2025-03-04 Neel Dey , Benjamin Billot , Hallee E. Wong , Clinton J. Wang , Mengwei Ren , P. Ellen Grant , Adrian V. Dalca , Polina Golland

We present an easy-to-use and lightweight surface and volume mesh sampling standalone application tailored for the needs of particle-based simulation. We describe the surface and volume sampling algorithms used in LEAVEN in a…

Graphics · Computer Science 2023-08-04 Alexander Sommer , Ulrich Schwanecke

We are interested in unsupervised reconstruction of complex near-capillary vasculature with thousands of bifurcations where supervision and learning are infeasible. Unsupervised methods can use many structural constraints, e.g. topology,…

Computer Vision and Pattern Recognition · Computer Science 2021-03-29 Zhongwen Zhang , Dmitrii Marin , Maria Drangova , Yuri Boykov

Perception still remains a challenging problem for autonomous navigation in unknown environment, especially for aerial vehicles. Most mapping algorithms for autonomous navigation are specifically designed for their very intended task, which…

Robotics · Computer Science 2024-09-25 Jinche La , Jun-Gill Kang , Dasol Lee
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