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Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

The occurrence and the distribution of patterns of trees associated to natural numbers are investigated. Bounds from above and below are proven for certain natural quantities.

Number Theory · Mathematics 2024-01-09 Roberto Conti , Pierluigi Contucci , Vitalii Iudelevich

We show that the distribution of the spectral maximum of monotonically independent self-adjoint operators coincides with the classical max-convolution of their distributions. In free probability, it was proven that for any probability…

Operator Algebras · Mathematics 2026-04-09 Yuki Ueda

The operation of transforming one spanning tree into another by replacing an edge has been considered widely, both for general and planar straight-line graphs. For the latter, several variants have been studied (e.g., edge slides and edge…

Combinatorics · Mathematics 2020-04-10 Torrie L. Nichols , Alexander Pilz , Csaba D. Tóth , Ahad N. Zehmakan

Topological behavior, such as chaos, irreducibility, and mixing of a one-sided shift of finite type, is well elucidated. Meanwhile, the investigation of multidimensional shifts, for instance, textile systems is difficult and only a few…

Dynamical Systems · Mathematics 2015-09-10 Jung-Chao Ban , Chih-Hung Chang

We study the growth of a time-ordered rooted tree by probabilistic attachment of new vertices to leaves. We construct a likelihood function of the leaves based on the connectivity of the tree. We take such connectivity to be induced by the…

Data Structures and Algorithms · Computer Science 2020-11-03 Nomvelo Sibisi

We consider uniform random permutations in proper substitution-closed classes and study their limiting behavior in the sense of permutons. The limit depends on the generating series of the simple permutations in the class. Under a mild…

The random percolation model can be viewed as the dual of a well defined confining gauge theory; since this theory, having no Monte Carlo dynamics at all, is simple to simulate, it is possible to study the properties of the flux tube with…

High Energy Physics - Lattice · Physics 2009-04-14 Pietro Giudice , Ferdinando Gliozzi , Stefano Lottini

We study rooted planar random trees with a probability distribution which is proportional to a product of weight factors $w_n$ associated to the vertices of the tree and depending only on their individual degrees $n$. We focus on the case…

Mathematical Physics · Physics 2015-05-27 Svante Janson , Thordur Jonsson , Sigurdur Orn Stefansson

The set of all permutations with $n$ symbols is a symmetric group denoted by $S_n$. A transposition tree, $T$, is a spanning tree over its $n$ vertices $V_T=${$1, 2, 3, \ldots n$} where the vertices are the positions of a permutation $\pi$…

Data Structures and Algorithms · Computer Science 2018-11-20 Bhadrachalam Chitturi , Indulekha T S

Inspired by Stufler's recent probabilistic proof of Otter's asymptotic number of unlabeled trees, we revisit work of Palmer and Schwenk, and study unlabeled forests from a probabilistic point of view. We show that the number of trees in a…

Probability · Mathematics 2025-07-23 Michal Bassan , Serte Donderwinkel , Brett Kolesnik

The recursive and hierarchical structure of full rooted trees is applicable to represent statistical models in various areas, such as data compression, image processing, and machine learning. In most of these cases, the full rooted tree is…

Machine Learning · Statistics 2022-03-24 Yuta Nakahara , Shota Saito , Akira Kamatsuka , Toshiyasu Matsushima

Local convergence of bounded degree graphs was introduced by Benjamini and Schramm. This result was extended further by Lyons to bounded average degree graphs. In this paper, we study the convergence of a random tree sequence where the…

Probability · Mathematics 2014-02-04 Attila Deák

Consider the d-dimensional lattice Z^d where each vertex is ``open'' or ``closed'' with probability p or 1-p, respectively. An open vertex v is connected by an edge to the closest open vertex w such that the dth co-ordinates of v and w…

Probability · Mathematics 2016-09-07 Sreela Gangopadhyay , Rahul Roy , Anish Sarkar

This work establishes combinatorial bounds on the Castelnuovo-Mumford regularity of edge ideals for trees and their multi-whiskered variants. For a tree \( T \), we give bounds for the Castelnuovo-Mumford regularity of \( I(T) \) in terms…

Commutative Algebra · Mathematics 2025-10-14 Ahtsham Ul Haq , Muhammad Usman Rashid , Muhammad Ishaq

We study a random fragmentation process and its associated random tree. The process has earlier been studied by Dean and Majumdar (J. Phys. A: Math. Gen., vol. 35, L501--L507), who found a phase transition: the number of fragmentations is…

Probability · Mathematics 2007-05-23 S. Janson , R. Neininger

In this paper, we study the independence of shifts defined on $\mathbb{N}^d$ ($\mathbb{N}^d$ shift) and trees (tree-shift). Firstly, for the completeness of the article, we provide a proof that an $\mathbb{N}^d$ shift has positive…

Dynamical Systems · Mathematics 2024-12-03 Jung-Chao Ban , Guan-Yu Lai

Methods for proving functional limit laws are developed for sequences of stochastic processes which allow a recursive distributional decomposition either in time or space. Our approach is an extension of the so-called contraction method to…

Probability · Mathematics 2015-09-10 Ralph Neininger , Henning Sulzbach

We show that for many models of random trees, the independence number divided by the size converges almost surely to a constant as the size grows to infinity; the trees that we consider include random recursive trees, binary and $m$-ary…

Probability · Mathematics 2020-03-23 Svante Janson

Let $\{X_j\}$ be independent, identically distributed random variables. It is well known that the functional CUSUM statistic and its randomly permuted version both converge weakly to a Brownian bridge if second moments exist. Surprisingly,…

Statistics Theory · Mathematics 2008-12-18 Alexander Aue , István Berkes , Lajos Horváth