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A topological RNA structure is derived from a diagram and its shape is obtained by collapsing the stacks of the structure into single arcs and by removing any arcs of length one. Shapes contain key topological, information and for fixed…

Combinatorics · Mathematics 2014-03-13 Fenix W. D. Huang , Christian M. Reidys

We present a simple kinetic model for the assembly of small single-stranded RNA viruses that can be used to carry out analytical packaging contests between different types of RNA molecules. The RNA selection mechanism is purely kinetic and…

Biological Physics · Physics 2021-02-09 Inbal Mizrahi , Robijn Bruinsma , Joseph Rudnick

Training deep neural networks (DNNs) usually requires massive training data and computational resources. Users who cannot afford this may prefer to outsource training to a third party or resort to publicly available pre-trained models.…

Cryptography and Security · Computer Science 2023-02-27 Najeeb Moharram Jebreel , Josep Domingo-Ferrer , Yiming Li

Given oracle access to a Neural Network (NN), it is possible to extract its underlying model. We here introduce a protection by adding parasitic layers which keep the underlying NN's predictions mostly unchanged while complexifying the task…

Machine Learning · Computer Science 2020-08-03 Hervé Chabanne , Vincent Despiegel , Linda Guiga

This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…

Information Theory · Computer Science 2022-05-10 Yonatan Yehezkeally , Daniella Bar-Lev , Sagi Marcovich , Eitan Yaakobi

Information technology and telecommunications have rapidly permeated various domains, resulting in a significant influx of data traversing the networks between computers. Consequently, research of cyberattacks in computer systems has become…

Cryptography and Security · Computer Science 2023-07-03 Ruochen Wu

Metamorphic viruses are considered the most dangerous of all computer viruses. Unlike other computer viruses that can be detected statically using static signature technique or dynamically using emulators, metamorphic viruses change their…

Cryptography and Security · Computer Science 2013-12-17 Moustafa Saleh

Non-coding RNA molecules fold into precise base pairing patterns to carry out critical roles in genetic regulation and protein synthesis. We show here that coupling systematic mutagenesis with high-throughput SHAPE chemical mapping enables…

Quantitative Methods · Quantitative Biology 2011-04-07 Wipapat Kladwang , Christopher C. VanLang , Pablo Cordero , Rhiju Das

Ransomware attacks have increased significantly in recent years, causing great destruction and damage to critical systems and business operations. Attackers are unfailingly finding innovative ways to bypass detection mechanisms,…

Cryptography and Security · Computer Science 2022-04-01 Avinash Singh , Richard Adeyemi Ikuesan , Hein Venter

In spam and malware detection, attackers exploit randomization to obfuscate malicious data and increase their chances of evading detection at test time; e.g., malware code is typically obfuscated using random strings or byte sequences to…

Machine Learning · Computer Science 2016-09-07 Samuel Rota Bulò , Battista Biggio , Ignazio Pillai , Marcello Pelillo , Fabio Roli

Among many prevailing malware, crypto-ransomware poses a significant threat as it financially extorts affected users by creating denial of access via unauthorized encryption of their documents as well as holding their documents hostage and…

Cryptography and Security · Computer Science 2020-11-25 Nitin Pundir , Mark Tehranipoor , Fahim Rahman

Graph Neural Networks (GNNs) have achieved promising results in tasks such as node classification and graph classification. However, recent studies reveal that GNNs are vulnerable to backdoor attacks, posing a significant threat to their…

Machine Learning · Computer Science 2025-03-13 Zhiwei Zhang , Minhua Lin , Junjie Xu , Zongyu Wu , Enyan Dai , Suhang Wang

The number of malware is constantly on the rise. Though most new malware are modifications of existing ones, their sheer number is quite overwhelming. In this paper, we present a novel system to visualize and map millions of malware to…

Cryptography and Security · Computer Science 2022-11-08 Tajuddin Manhar Mohammed , Lakshmanan Nataraj , Satish Chikkagoudar , Shivkumar Chandrasekaran , B. S. Manjunath

The Attacks done by Viruses, Worms, Hackers, etc. are a Network Security-Problem in many Organisations. Current Intrusion Detection Systems have significant Disadvantages, e.g. the need of plenty of Computational Power or the Local…

Cryptography and Security · Computer Science 2008-05-08 Michael Hilker , Christoph Schommer

Our computer systems for decades have been threatened by various types of hardware and software attacks of which Malwares have been one of them. This malware has the ability to steal, destroy, contaminate, gain unintended access, or even…

Cryptography and Security · Computer Science 2021-04-15 Abhijitt Dhavlle , Sanket Shukla

In this article, we explored orthogonal methods to analyze malware motivated by signal and image processing. Malware samples are represented as images or signals. Image and signal-based features are extracted to characterize malware. Our…

Cryptography and Security · Computer Science 2016-05-18 Lakshmanan Nataraj , B. S. Manjunath

Availability of high-resolution crystal structures of ribosomal subunits of different species opens a route to investigate about molecular interactions between its constituents and stabilization strategy. Structural analysis of the small…

Biomolecules · Quantitative Biology 2012-12-06 Saurav Mallik , Sudip Kundu

Portable genome sequencing technology is revolutionizing genomic research by providing a faster, more flexible method of sequencing DNA and RNA [1, 2]. The unprecedented shift from bulky stand-alone benchtop equipment confined in a…

Cryptography and Security · Computer Science 2024-07-18 Carson Stillman , Jonathan E. Bravo , Christina Boucher , Sara Rampazzi

DNA storage has emerged as an important area of research. The reliability of DNA storage system depends on designing the DNA strings (called DNA codes) that are sufficiently dissimilar. In this work, we introduce DNA codes that satisfy a…

Information Theory · Computer Science 2022-11-28 Krishna Gopal Benerjee , Sourav Deb , Manish K Gupta

RNA/protein interactions play crucial roles in controlling gene expression. They are becoming important targets for pharmaceutical applications. Due to RNA flexibility and to the strength of electrostatic interactions, standard docking…

Biomolecules · Quantitative Biology 2013-07-23 Trang N. Do , Paolo Carloni , Gabriele Varani , Giovanni Bussi
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