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t-distributed Stochastic Neighborhood Embedding (t-SNE) is a method for dimensionality reduction and visualization that has become widely popular in recent years. Efficient implementations of t-SNE are available, but they scale poorly to…

Machine Learning · Computer Science 2019-02-26 George C. Linderman , Manas Rachh , Jeremy G. Hoskins , Stefan Steinerberger , Yuval Kluger

Dimensionality reduction is crucial both for visualization and preprocessing high dimensional data for machine learning. We introduce a novel method based on a hierarchy built on 1-nearest neighbor graphs in the original space which is used…

Computer Vision and Pattern Recognition · Computer Science 2022-05-31 M. Saquib Sarfraz , Marios Koulakis , Constantin Seibold , Rainer Stiefelhagen

Visual-semantic embedding aims to find a shared latent space where related visual and textual instances are close to each other. Most current methods learn injective embedding functions that map an instance to a single point in the shared…

Computer Vision and Pattern Recognition · Computer Science 2019-07-18 Yale Song , Mohammad Soleymani

Parametric Embedding (PE) has recently been proposed as a general-purpose algorithm for class visualisation. It takes class posteriors produced by a mixture-based clustering algorithm and projects them in 2D for visualisation. However,…

Astrophysics · Physics 2009-11-11 Ata Kaban , Jianyong Sun , Somak Raychaudhury , Louisa Nolan

Stochastic Neighbor Embedding (SNE) methods minimize the divergence between the similarity matrix of a high-dimensional data set and its counterpart from a low-dimensional embedding, leading to widely applied tools for data visualization.…

Machine Learning · Computer Science 2018-09-13 Yao Lu , Jukka Corander , Zhirong Yang

Biomedical research often produces high-dimensional data confounded by batch effects such as systematic experimental variations, different protocols and subject identifiers. Without proper correction, low-dimensional representation of…

Visualizing high-dimensional data is an essential task in Data Science and Machine Learning. The Centroid-Encoder (CE) method is similar to the autoencoder but incorporates label information to keep objects of a class close together in the…

Machine Learning · Computer Science 2020-03-03 Tomojit Ghosh , Michael Kirby

We propose a visualization technique that utilizes neural network embeddings and a generative network to reconstruct original data. This method allows for independent manipulation of individual image embeddings through its non-parametric…

Machine Learning · Computer Science 2023-02-22 Halid Ziya Yerebakan , Gerardo Hermosillo Valadez

Multimodal VAEs seek to model the joint distribution over heterogeneous data (e.g.\ vision, language), whilst also capturing a shared representation across such modalities. Prior work has typically combined information from the modalities…

Machine Learning · Computer Science 2022-12-19 Tom Joy , Yuge Shi , Philip H. S. Torr , Tom Rainforth , Sebastian M. Schmon , N. Siddharth

t-Distributed Stochastic Neighbor Embedding (t-SNE) for the visualization of multidimensional data has proven to be a popular approach, with successful applications in a wide range of domains. Despite their usefulness, t-SNE projections can…

Machine Learning · Computer Science 2024-04-19 Angelos Chatzimparmpas , Rafael M. Martins , Andreas Kerren

Scientific and engineering processes deliver massive high-dimensional data sets that are generated as non-linear transformations of an initial state and few process parameters. Mapping such data to a low-dimensional manifold facilitates…

Machine Learning · Statistics 2018-08-07 Frank Schoeneman , Varun Chandola , Nils Napp , Olga Wodo , Jaroslaw Zola

Cluster visualization is an essential task for nonlinear dimensionality reduction as a data analysis tool. It is often believed that Student t-Distributed Stochastic Neighbor Embedding (t-SNE) can show clusters for well clusterable data,…

Machine Learning · Computer Science 2021-10-07 Zhirong Yang , Yuwei Chen , Jukka Corander

Existing methods for explaining black box learning models often focus on building local explanations of model behaviour for a particular data item. It is possible to create global explanations for all data items, but these explanations…

Machine Learning · Computer Science 2023-10-16 Anton Björklund , Jarmo Mäkelä , Kai Puolamäki

While neural networks for learning representation of multi-view data have been previously proposed as one of the state-of-the-art multi-view dimension reduction techniques, how to make the representation discriminative with only a small…

Machine Learning · Computer Science 2018-11-13 Vahid Noroozi , Sara Bahaadini , Lei Zheng , Sihong Xie , Weixiang Shao , Philip S. Yu

Given a union of non-linear manifolds, non-linear subspace clustering or manifold clustering aims to cluster data points based on manifold structures and also learn to parameterize each manifold as a linear subspace in a feature space. Deep…

Machine Learning · Computer Science 2022-01-26 Zengyi Li , Yubei Chen , Yann LeCun , Friedrich T. Sommer

Data are not only ubiquitous in society, but are increasingly complex both in size and dimensionality. Dimension reduction offers researchers and scholars the ability to make such complex, high dimensional data spaces simpler and more…

Machine Learning · Computer Science 2021-03-15 Philip D. Waggoner

t-distributed stochastic neighbor embedding (t-SNE) is a well-established visualization method for complex high-dimensional data. However, the original t-SNE method is nonparametric, stochastic, and often cannot well prevserve the global…

Computer Vision and Pattern Recognition · Computer Science 2022-01-14 Zixia Zhou , Yuanyuan Wang , Boudewijn P. F. Lelieveldt , Qian Tao

Manifold learning (ML), known also as non-linear dimension reduction, is a set of methods to find the low dimensional structure of data. Dimension reduction for large, high dimensional data is not merely a way to reduce the data; the new…

Machine Learning · Statistics 2023-11-08 Marina Meilă , Hanyu Zhang

There has been an intense recent activity in embedding of very high dimensional and nonlinear data structures, much of it in the data science and machine learning literature. We survey this activity in four parts. In the first part we cover…

Machine Learning · Statistics 2022-09-01 Dag Tjøstheim , Martin Jullum , Anders Løland

Neighbour embeddings (NE) allow the representation of high dimensional datasets into lower dimensional spaces and are often used in data visualisation. In practice, accelerated approximations are employed to handle very large datasets.…

Machine Learning · Computer Science 2025-09-10 Pierre Lambert , Edouard Couplet , Michel Verleysen , John Aldo Lee