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Jim Shapiro synthesizes a great many observations about the mechanisms of evolution to reach the remarkable conclusion that large-scale modification, exchange, and rearrangement of the genome are common and should be viewed as fundamental…

Populations and Evolution · Quantitative Biology 2015-06-18 Michael W. Deem

Language universals have long been attributed to an innate Universal Grammar. An alternative explanation states that linguistic universals emerged independently in every language in response to shared cognitive or perceptual biases. A…

Physics and Society · Physics 2015-06-25 Andrea Baronchelli , Vittorio Loreto , Andrea Puglisi

Recent contributions address the problem of language coexistence as that of two species competing to aggregate speakers, thus focusing on the dynamics of linguistic traits across populations. They draw inspiration from physics and biology…

Physics and Society · Physics 2017-04-03 Luís F Seoane , Jorge Mira

An emotional version of Sapir-Whorf hypothesis suggests that differences in language emotionalities influence differences among cultures no less than conceptual differences. Conceptual contents of languages and cultures to significant…

Artificial Intelligence · Computer Science 2011-03-15 Leonid Perlovsky

Deep neural-network-based language models (LMs) are increasingly applied to large-scale protein sequence data to predict protein function. However, being largely black-box models and thus challenging to interpret, current protein LM…

Quantitative Methods · Quantitative Biology 2024-08-06 Mai Ha Vu , Rahmad Akbar , Philippe A. Robert , Bartlomiej Swiatczak , Victor Greiff , Geir Kjetil Sandve , Dag Trygve Truslew Haug

The similarity of the evolution of human languages (or alphabets, bird songs, >...) to biological evolution of species is utilized to study with up to $10^9$ people the rise and fall of languages either by macroscopic differential equations…

Physics and Society · Physics 2009-11-11 Dietrich Stauffer , Christian Schulze

We present significantly advanced studies of the previously introduced physical growth mechanism and unite it with biochemical growth factors. Obtained results allowed formulating the general growth law which governs growth and evolutional…

Other Quantitative Biology · Quantitative Biology 2012-11-29 Yu. K. Shestopaloff

Given the rapidly evolving landscape of linguistic prevalence, whereby a majority of the world's existing languages are dying out in favor of the adoption of a comparatively fewer set of languages, the factors behind this phenomenon has…

Physics and Society · Physics 2021-06-30 Sayat Mimar , Mariamo Mussa Juane , Jorge Mira , Juyong Park , Alberto P. Munuzuri , Gourab Ghoshal

Life occurs in concentrated `Ringer Solutions' derived from seawater that Lesser Blum studied for most of his life. As we worked together, Lesser and I realized that the questions asked of those solutions were quite different in biology…

Other Quantitative Biology · Quantitative Biology 2021-09-24 Bob Eisenberg

Language can be described as a network of interacting objects with different qualitative properties and complexity. These networks include semantic, syntactic, or phonological levels and have been found to provide a new picture of language…

Physics and Society · Physics 2018-03-07 Luís F Seoane , Ricard Solé

Protein domains are found on genomes with notable statistical distributions, which bear a high degree of similarity. Previous work has shown how these distributions can be accounted for by simple models, where the main ingredients are…

Genomics · Quantitative Biology 2008-07-14 M. Cosentino Lagomarsino , A. L. Sellerio , P. D. Heijning , B. Bassetti

Understanding and creating mathematics using natural mathematical language - the mixture of symbolic and natural language used by humans - is a challenging and important problem for driving progress in machine learning. As a step in this…

Information Retrieval · Computer Science 2021-06-09 Sean Welleck , Jiacheng Liu , Ronan Le Bras , Hannaneh Hajishirzi , Yejin Choi , Kyunghyun Cho

Since the completion of the human genome sequencing project in 2001, significant progress has been made in areas such as gene regulation editing and protein structure prediction. However, given the vast amount of genomic data, the segments…

Other Quantitative Biology · Quantitative Biology 2025-01-29 Wang Liang

Evolution, the engine behind the survival and growth of life on Earth, operates through the population-based process of reproduction. Inspired by this principle, this paper formally defines a newly emerging problem -- the population-based…

Computation and Language · Computer Science 2025-03-10 Yiqun Zhang , Peng Ye , Xiaocui Yang , Shi Feng , Shufei Zhang , Lei Bai , Wanli Ouyang , Shuyue Hu

Variation and selection are the core principles of Darwinian evolution, yet quantitatively relating the diversity of a population to its capacity to respond to selection is challenging. Here, we examine this problem at a molecular level in…

Populations and Evolution · Quantitative Biology 2016-04-27 Sébastien Boyer , Dipanwita Biswas , Ananda Kumar Soshee , Natale Scaramozzino , Clément Nizak , Olivier Rivoire

Statistical regularities in human language have fascinated researchers for decades, suggesting deep underlying principles governing its evolution and information structuring for efficient communication. While Zipf's Law describes the…

Physics and Society · Physics 2025-04-29 Alessandro Bellina , Vito D. P. Servedio

One of the most intriguing questions in evolution is how organisms exhibit suitable phenotypic variation to rapidly adapt in novel selective environments which is crucial for evolvability. Recent work showed that when selective environments…

Populations and Evolution · Quantitative Biology 2015-08-28 Kostas Kouvaris , Jeff Clune , Louis Kounios , Markus Brede , Richard A. Watson

Traditionally evolution is seen as a process where from a pool of possible variations of a population (e.g. biological species or industrial goods) a few variations get selected which survive and proliferate, whereas the others vanish.…

Populations and Evolution · Quantitative Biology 2008-09-25 Rudolf Hanel , Stefan Thurner

Language provides simple ways of communicating generalizable knowledge to each other (e.g., "Birds fly", "John hikes", "Fire makes smoke"). Though found in every language and emerging early in development, the language of generalization is…

Computation and Language · Computer Science 2018-12-17 Michael Henry Tessler , Noah D. Goodman

If language evolved by sexual selection to display superior intelligence, then we require conversational skills, to impress other people, gain high social status, and get a mate. Conversational skills include a Theory of Mind, a sense of…

Neurons and Cognition · Quantitative Biology 2024-05-13 Robert Worden