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A critical mystery in neuroscience lies in determining how anatomical structure impacts the complex functional dynamics of human thought. How does large-scale brain circuitry constrain states of neuronal activity and transitions between…

Neurons and Cognition · Quantitative Biology 2016-07-08 Shi Gu , Matthew Cieslak , Benjamin Baird , Sarah F. Muldoon , Scott T. Grafton , Fabio Pasqualetti , Danielle S. Bassett

Analysis of brain activity in resting-state is of fundamental importance in identifying functional characteristics of neuronal system. Although resting brain has been extensively investigated for low frequency synchrony between brain…

Neurons and Cognition · Quantitative Biology 2012-01-04 Shahab Kadkhodaeian Bakhtiari , Gholam-Ali Hossein-Zadeh

We present a new paradigm in the study of brain mental dynamics on the basis of the stable transient activity neural networks observed in experiments. This new approach is in contrast to traditional system analysis usually adopted in…

Adaptation and Self-Organizing Systems · Physics 2009-09-08 Mikhail I. Rabinovich , Mehmet K. Muezzinoglu

Understanding the dynamics of neural networks in different width regimes is crucial for improving their training and performance. We present an exact solution for the learning dynamics of a one-hidden-layer linear network, with…

Machine Learning · Computer Science 2025-02-24 Yizhou Xu , Liu Ziyin

Understanding the evolution of brain functional networks over time is of great significance for the analysis of cognitive mechanisms and the diagnosis of neurological diseases. Existing methods often have difficulty in capturing the…

Machine Learning · Computer Science 2025-10-30 Tianqi Guo , Liping Chen , Ciyuan Peng , Jingjing Zhou , Jing Ren

Bottom-up models of functionally relevant patterns of neural activity provide an explicit link between neuronal dynamics and computation. A prime example of functional activity pattern is hippocampal replay, which is critical for memory…

Neurons and Cognition · Quantitative Biology 2024-09-30 Bastian Pietras , Valentin Schmutz , Tilo Schwalger

Finding an appropriate representation of dynamic activities in the brain is crucial for many downstream applications. Due to its highly dynamic nature, temporally averaged fMRI (functional magnetic resonance imaging) can only provide a…

Machine Learning · Computer Science 2022-08-18 Sikun Lin , Shuyun Tang , Scott Grafton , Ambuj Singh

Non-reciprocal interactions are a defining feature of many complex systems, biological, ecological, and technological, often pushing them far from equilibrium and enabling rich dynamical responses. These asymmetries can arise at multiple…

Biological Physics · Physics 2026-02-17 Anna Poggialini , Serena Di Santo , Pablo Villegas , Andrea Gabrielli , Miguel A. Muñoz

A neuron transforms its input into output spikes, and this transformation is the basic unit of computation in the nervous system. The spiking response of the neuron to a complex, time-varying input can be predicted from the detailed…

Neurons and Cognition · Quantitative Biology 2011-12-19 Michael Famulare , Adrienne Fairhall

Human brain dynamics can be profitably viewed through the lens of statistical mechanics, where neurophysiological activity evolves around and between local attractors representing preferred mental states. Many physically-inspired models of…

Neurons and Cognition · Quantitative Biology 2016-09-06 Arian Ashourvan , Shi Gu , Marcelo G. Mattar , Jean M. Vettel , Danielle S. Bassett

Physics perfectly describes neuronal operation, provided that we take into account that biology uses slow, positively charged ions rather than electrons as charge carriers and remove untested ad hoc hypotheses that contradict science's…

Biological Physics · Physics 2026-04-13 János Végh

Dynamics of a chaotic spiking neuron model are being studied mathematically and experimentally. The Nonlinear Dynamic State neuron (NDS) is analysed to further understand the model and improve it. Chaos has many interesting properties such…

Artificial Intelligence · Computer Science 2013-10-29 Mohammad Alhawarat , Waleed Nazih , Mohammad Eldesouki

This article describes a numerical procedure designed to tune the parameters of periodically-driven dynamical systems to a state in which they exhibit rich dynamical behavior. This is achieved by maximizing the diversity of subharmonic…

Chaotic Dynamics · Physics 2017-02-13 Leandro M. Alonso

It has become increasingly popular to study the brain as a network due to the realization that functionality cannot be explained exclusively by independent activation of specialized regions. Instead, across a large spectrum of behaviors,…

Neurons and Cognition · Quantitative Biology 2014-07-22 Petko Bogdanov , Nazli Dereli , Danielle S. Bassett , Scott T. Grafton , Ambuj K. Singh

The functional network of the brain continually adapts to changing environmental demands. The environmental changes closely connect with changes of active cognitive processes. In recent years, the network approach has emerged as a promising…

Neurons and Cognition · Quantitative Biology 2024-03-13 Ilya Ernston , Arsenii Onuchin , Timofey Adamovich

Neuroscientists and computer vision researchers use model-brain alignment benchmarks to compare artificial and biological vision systems. These benchmarks rank models according to alignment measures such as the similarity of…

Neurons and Cognition · Quantitative Biology 2026-04-24 Larissa Höfling , Matthias Tangemann , Lotta Piefke , Susanne Keller , Katrin Franke , Matthias Bethge

Modeling the dynamics of non-stationary stochastic systems requires balancing the representational power of deep learning with the mathematical transparency of classical models. While classical Markov transition operators provide explicit,…

Machine Learning · Computer Science 2026-05-07 Jan Rovirosa , Jesse Schmolze

Conventional neuroimaging analyses have revealed the computational specificity of localized brain regions, exploiting the power of the subtraction technique in fMRI and event-related potential analyses in EEG. Moving beyond this convention,…

Neurons and Cognition · Quantitative Biology 2016-06-15 Javier O. Garcia , Justin Brooks , Scott Kerick , Tony Johnson , Tim Mullen , Jean M. Vettel

Further analysis and experimentation is carried out in this paper for a chaotic dynamic model, viz. the Nonlinear Dynamic State neuron (NDS). The analysis and experimentations are performed to further understand the underlying dynamics of…

Neural and Evolutionary Computing · Computer Science 2014-08-19 Mohammad Alhawarat , Waleed Nazih , Mohammad Eldesouki

The ability of a brain or a neural network to efficiently learn depends crucially on both the task structure and the learning rule. Previous works have analyzed the dynamical equations describing learning in the relatively simplified…

Machine Learning · Computer Science 2025-02-26 Christian Schmid , James M. Murray