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This paper presents a Bayesian method for identification of jump Markov linear system parameters. A primary motivation is to provide accurate quantification of parameter uncertainty without relying on asymptotic in data-length arguments. To…

Methodology · Statistics 2021-02-11 Mark P. Balenzuela , Adrian G. Wills , Christopher Renton , Brett Ninness

Parameter inference and uncertainty quantification are important steps when relating mathematical models to real-world observations, and when estimating uncertainty in model predictions. However, methods for doing this can be…

Quantitative Methods · Quantitative Biology 2025-08-27 Michael J. Plank , Matthew J. Simpson

We are concerned with the problem of decomposing the parameter space of a parametric system of polynomial equations, and possibly some polynomial inequality constraints, with respect to the number of real solutions that the system attains.…

Symbolic Computation · Computer Science 2022-02-11 AmirHosein Sadeghimanesh , Matthew England

Reconstructing the equation of motion and thus the network topology of a system from time series is a very important problem. Although many powerful methods have been developed, it remains a great challenge to deal with systems in high…

Adaptation and Self-Organizing Systems · Physics 2023-08-16 Zishuo Yan , Lili Gui , Kun Xu , Yueheng Lan

We consider the modeling of data generated by a latent continuous-time Markov jump process with a state space of finite but unknown dimensions. Typically in such models, the number of states has to be pre-specified, and Bayesian inference…

Methodology · Statistics 2021-08-12 Yu Luo , David A. Stephens

We present a new subspace-based method to construct probabilistic models for high-dimensional data and highlight its use in anomaly detection. The approach is based on a statistical estimation of probability density using densities of…

Machine Learning · Computer Science 2021-08-16 Cetin Savkli , Catherine Schwartz

Parameter estimation based on uncertain data represented as belief structures is one of the latest problems in the Dempster-Shafer theory. In this paper, a novel method is proposed for the parameter estimation in the case where belief…

Artificial Intelligence · Computer Science 2014-02-18 Xinyang Deng , Yong Hu , Felix Chan , Sankaran Mahadevan , Yong Deng

We developed a novel approach to identification and model testing in linear structural equation models (SEMs) based on auxiliary variables (AVs), which generalizes a widely-used family of methods known as instrumental variables. The…

Methodology · Statistics 2019-10-09 Bryant Chen , Daniel Kumor , Elias Bareinboim

In this paper we propose a novel approach to identify dynamical systems. The method estimates the model structure and the parameters of the model simultaneously, automating the critical decisions involved in identification such as model…

Systems and Control · Computer Science 2020-01-16 Dhruv Khandelwal , Maarten Schoukens , Roland Tóth

One of the main contributions which Volker Weispfenning made to mathematics is related to Groebner bases theory. In this paper we present an algorithm for computing all algebraic intermediate subfields in a separably generated unirational…

Symbolic Computation · Computer Science 2008-05-15 Jaime Gutierrez , David Sevilla

Ordinary differential equation models have become a standard tool for the mechanistic description of biochemical processes. If parameters are inferred from experimental data, such mechanistic models can provide accurate predictions about…

Quantitative Methods · Quantitative Biology 2018-10-12 Fabian Fröhlich , Carolin Loos , Jan Hasenauer

In this paper we introduce a working generalization of the theory of Gr\"obner bases for algebras of partial difference polynomials with constant coefficients. One obtains symbolic (formal) computation for systems of linear or non-linear…

Rings and Algebras · Mathematics 2013-07-24 Roberto La Scala

The modeling of dynamical systems is a pervasive concern for not only describing but also predicting and controlling natural phenomena and engineered systems. Current data-driven approaches often assume prior knowledge of the relevant state…

Artificial Intelligence · Computer Science 2024-08-22 Félix Chavelli , Zi-Yu Khoo , Dawen Wu , Jonathan Sze Choong Low , Stéphane Bressan

The technological applications of hidden Markov models have been extremely diverse and successful, including natural language processing, gesture recognition, gene sequencing, and Kalman filtering of physical measurements. HMMs are highly…

Algebraic Geometry · Mathematics 2012-09-04 Andrew J. Critch

Many models in mathematical epidemiology are developed with the aim to provide a framework for parameter estimation and then prediction. It is well-known that parameters are not always uniquely identifiable. In this paper we consider…

Dynamical Systems · Mathematics 2022-08-17 István Zoltán Kiss , Péter L. Simon

We present a method for modelling the covariance structure of tensor-variate data, with the ulterior aim of learning an unknown model parameter vector using such data. We express the high-dimensional observable as a function of this sought…

Applications · Statistics 2015-12-18 Kangrui Wang , Dalia Chakrabarty

Existing methods for structure discovery in time series data construct interpretable, compositional kernels for Gaussian process regression models. While the learned Gaussian process model provides posterior mean and variance estimates,…

Machine Learning · Statistics 2016-11-22 David Janz , Brooks Paige , Tom Rainforth , Jan-Willem van de Meent , Frank Wood

Existing structural analysis methods may fail to find all hidden constraints for a system of differential-algebraic equations with parameters if the system is structurally unamenable for certain values of the parameters. In this paper, for…

Numerical Analysis · Mathematics 2024-01-11 Wenqiang Yang , Wenyuan Wu , Greg Reid

Deep learning algorithms have recently shown to be a successful tool in estimating parameters of statistical models for which simulation is easy, but likelihood computation is challenging. But the success of these approaches depends on…

Machine Learning · Statistics 2024-02-20 Amanda Lenzi , Haavard Rue

Implicit sampling is a weighted sampling method that is used in data assimilation, where one sequentially updates estimates of the state of a stochastic model based on a stream of noisy or incomplete data. Here we describe how to use…

Numerical Analysis · Mathematics 2016-01-20 Matthias Morzfeld , Xuemin Tu , Jon Wilkening , Alexandre J. Chorin