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Automatically extracting the relationships between chemicals and diseases is significantly important to various areas of biomedical research and health care. Biomedical experts have built many large-scale knowledge bases (KBs) to advance…

Computation and Language · Computer Science 2019-12-24 Huiwei Zhou , Yunlong Yang , Shixian Ning , Zhuang Liu , Chengkun Lang , Yingyu Lin , Degen Huang

Named Entity Recognition seeks to extract substrings within a text that name real-world objects and to determine their type (for example, whether they refer to persons or organizations). In this survey, we first present an overview of…

Computation and Language · Computer Science 2024-12-23 Imed Keraghel , Stanislas Morbieu , Mohamed Nadif

Entity Recognition (ER) within a text is a fundamental exercise in Natural Language Processing, enabling further depending tasks such as Knowledge Extraction, Text Summarisation, or Keyphrase Extraction. An entity consists of single words…

Computation and Language · Computer Science 2021-06-14 Andreas Waldis , Luca Mazzola

Visually-rich document entity retrieval (VDER), which extracts key information (e.g. date, address) from document images like invoices and receipts, has become an important topic in industrial NLP applications. The emergence of new document…

Artificial Intelligence · Computer Science 2023-12-12 Jiayi Chen , Hanjun Dai , Bo Dai , Aidong Zhang , Wei Wei

While transfer learning has become a ubiquitous technique used across Natural Language Processing (NLP) tasks, it is often unable to replicate the performance of pre-trained models on text of niche domains like Automotive. In this paper we…

Computation and Language · Computer Science 2021-12-02 Anmol Nayak , Hari Prasad Timmapathini

Clinical named entity recognition (NER) aims to retrieve important entities within clinical narratives. Recent works have demonstrated that large language models (LLMs) can achieve strong performance in this task. While previous works focus…

Computation and Language · Computer Science 2025-02-21 Reza Averly , Xia Ning

Named entity recognition often fails in idiosyncratic domains. That causes a problem for depending tasks, such as entity linking and relation extraction. We propose a generic and robust approach for high-recall named entity recognition. Our…

Computation and Language · Computer Science 2016-08-25 Sebastian Arnold , Felix A. Gers , Torsten Kilias , Alexander Löser

Named entity recognition on the in-domain supervised and few-shot settings have been extensively discussed in the NLP community and made significant progress. However, cross-domain NER, a more common task in practical scenarios, still poses…

Computation and Language · Computer Science 2024-07-25 Ke Bao , Chonghuan Yang

Data available across the web is largely unstructured. Offers published by multiple sources like banks, digital wallets, merchants, etc., are one of the most accessed advertising data in today's world. This data gets accessed by millions of…

Information Retrieval · Computer Science 2019-06-12 Anusha Holla , Bharat Gaind , Vikas Reddy Katta , Abhishek Kundu , S Kamalesh

Information extraction techniques, including named entity recognition (NER) and relation extraction (RE), are crucial in many domains to support making sense of vast amounts of unstructured text data by identifying and connecting relevant…

Computation and Language · Computer Science 2024-01-17 Mingjie Li , Karin Verspoor

Few-shot Named Entity Recognition (NER) aims to extract named entities using only a limited number of labeled examples. Existing contrastive learning methods often suffer from insufficient distinguishability in context vector representation…

Computation and Language · Computer Science 2024-05-09 Haojie Zhang , Yimeng Zhuang

Named Entity Recognition (NER) is a key component in NLP systems for question answering, information retrieval, relation extraction, etc. NER systems have been studied and developed widely for decades, but accurate systems using deep neural…

Computation and Language · Computer Science 2019-12-12 Vikas Yadav , Steven Bethard

The clinical named entity recognition (CNER) task seeks to locate and classify clinical terminologies into predefined categories, such as diagnostic procedure, disease disorder, severity, medication, medication dosage, and sign symptom.…

Computation and Language · Computer Science 2021-06-25 Yichao Zhou , Chelsea Ju , J. Harry Caufield , Kevin Shih , Calvin Chen , Yizhou Sun , Kai-Wei Chang , Peipei Ping , Wei Wang

Named Entity Recognition (NER) is a fundamental task in NLP that is used to locate the key information in text and is primarily applied in conversational and search systems. In commercial applications, NER or comparable slot-filling methods…

Computation and Language · Computer Science 2023-06-13 Maithili Sabane , Aparna Ranade , Onkar Litake , Parth Patil , Raviraj Joshi , Dipali Kadam

We compare the use of LSTM-based and CNN-based character-level word embeddings in BiLSTM-CRF models to approach chemical and disease named entity recognition (NER) tasks. Empirical results over the BioCreative V CDR corpus show that the use…

Computation and Language · Computer Science 2018-08-28 Zenan Zhai , Dat Quoc Nguyen , Karin Verspoor

In this paper we tackle multilingual named entity recognition task. We use the BERT Language Model as embeddings with bidirectional recurrent network, attention, and NCRF on the top. We apply multilingual BERT only as embedder without any…

Computation and Language · Computer Science 2023-10-04 Anton A. Emelyanov , Ekaterina Artemova

Named entity recognition (NER) remains challenging when entity mentions can be discontinuous. Existing methods break the recognition process into several sequential steps. In training, they predict conditioned on the golden intermediate…

Computation and Language · Computer Science 2021-11-29 Yucheng Wang , Bowen Yu , Hongsong Zhu , Tingwen Liu , Nan Yu , Limin Sun

Identifying the relations between chemicals and proteins is an important text mining task. BioCreative VII track 1 DrugProt task aims to promote the development and evaluation of systems that can automatically detect relations between…

Computation and Language · Computer Science 2021-12-07 Mehmet Efruz Karabulut , K. Vijay-Shanker , Yifan Peng

The field of clinical natural language processing has been advanced significantly since the introduction of deep learning models. The self-supervised representation learning and the transfer learning paradigm became the methods of choice in…

Computation and Language · Computer Science 2020-04-27 Andrey Kormilitzin , Nemanja Vaci , Qiang Liu , Alejo Nevado-Holgado

Named entity recognition (NER) systems that perform well require task-related and manually annotated datasets. However, they are expensive to develop, and are thus limited in size. As there already exists a large number of NER datasets that…

Computation and Language · Computer Science 2019-04-23 Nargiza Nosirova , Mingbin Xu , Hui Jiang