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Named Entity Recognition task is one of the core tasks of information extraction. Word ambiguity and word abbreviation are important reasons for the low recognition rate of named entities. In this paper, we propose a novel named entity…

Computation and Language · Computer Science 2022-08-16 Renjie Zhou , Qiang Hu , Jian Wan , Jilin Zhang , Qiang Liu , Tianxiang Hu , Jianjun Li

Modern computational organic chemistry is becoming increasingly data-driven. There remain a large number of important unsolved problems in this area such as product prediction given reactants, drug discovery, and metric-optimized molecule…

Biomolecules · Quantitative Biology 2026-02-10 Josh Payne , Mario Srouji , Dian Ang Yap , Vineet Kosaraju

Named-entity recognition (NER) detects texts with predefined semantic labels and is an essential building block for natural language processing (NLP). Notably, recent NER research focuses on utilizing massive extra data, including…

Computation and Language · Computer Science 2023-05-09 Yuxiang Zhang , Junjie Wang , Xinyu Zhu , Tetsuya Sakai , Hayato Yamana

In this paper, we present our approach to extracting structured information from unstructured Electronic Health Records (EHR) [2] which can be used to, for example, study adverse drug reactions in patients due to chemicals in their…

Computation and Language · Computer Science 2020-01-30 Amogh Kamat Tarcar , Aashis Tiwari , Vineet Naique Dhaimodker , Penjo Rebelo , Rahul Desai , Dattaraj Rao

Motivation: The proliferation of Biomedical research articles has made the task of information retrieval more important than ever. Scientists and Researchers are having difficulty in finding articles that contain information relevant to…

Computation and Language · Computer Science 2020-11-04 Harsh Patel

Mining structured knowledge from tweets using named entity recognition (NER) can be beneficial for many down stream applications such as recommendation and intention understanding. With tweet posts tending to be multimodal, multimodal named…

Computation and Language · Computer Science 2024-01-05 Peipei Liu , Hong Li , Yimo Ren , Jie Liu , Shuaizong Si , Hongsong Zhu , Limin Sun

Cross-domain NER is a practical yet challenging problem since the data scarcity in the real-world scenario. A common practice is first to learn a NER model in a rich-resource general domain and then adapt the model to specific domains. Due…

Computation and Language · Computer Science 2024-08-09 Junhao Zheng , Haibin Chen , Qianli Ma

Recent years have witnessed a substantial increase in the use of deep learning to solve various natural language processing (NLP) problems. Early deep learning models were constrained by their sequential or unidirectional nature, such that…

Information Retrieval · Computer Science 2024-03-05 Jiajia Wang , Jimmy X. Huang , Xinhui Tu , Junmei Wang , Angela J. Huang , Md Tahmid Rahman Laskar , Amran Bhuiyan

Named Entity Recognition (NER) is an essential precursor task for many natural language applications, such as relation extraction or event extraction. Much of the NER research has been done on datasets with few classes of entity types (e.g.…

Computation and Language · Computer Science 2020-09-17 Parul Awasthy , Taesun Moon , Jian Ni , Radu Florian

Named entity recognition (NER) has been studied extensively and the earlier algorithms were based on sequence labeling like Hidden Markov Models (HMM) and conditional random fields (CRF). These were followed by neural network based deep…

Computation and Language · Computer Science 2021-05-10 Shalin Shah , Ryan Siskind

Biomedical text mining is becoming increasingly important as the number of biomedical documents rapidly grows. With the progress in natural language processing (NLP), extracting valuable information from biomedical literature has gained…

Computation and Language · Computer Science 2019-10-21 Jinhyuk Lee , Wonjin Yoon , Sungdong Kim , Donghyeon Kim , Sunkyu Kim , Chan Ho So , Jaewoo Kang

In medical information extraction, medical Named Entity Recognition (NER) is indispensable, playing a crucial role in developing medical knowledge graphs, enhancing medical question-answering systems, and analyzing electronic medical…

Computation and Language · Computer Science 2024-03-26 Xiaojing Du , Hanjie Zhao , Danyan Xing , Yuxiang Jia , Hongying Zan

Background. Previous state-of-the-art systems on Drug Name Recognition (DNR) and Clinical Concept Extraction (CCE) have focused on a combination of text "feature engineering" and conventional machine learning algorithms such as conditional…

Computation and Language · Computer Science 2018-06-26 Inigo Jauregi Unanue , Ehsan Zare Borzeshi , Massimo Piccardi

This paper evaluates Few-Shot Prompting with Large Language Models for Named Entity Recognition (NER). Traditional NER systems rely on extensive labeled datasets, which are costly and time-consuming to obtain. Few-Shot Prompting or…

Information Retrieval · Computer Science 2024-09-05 Hédi Zeghidi , Ludovic Moncla

Recognizing useful named entities plays a vital role in medical information processing, which helps drive the development of medical area research. Deep learning methods have achieved good results in medical named entity recognition (NER).…

Computation and Language · Computer Science 2022-11-10 Junzhe Jiang , Mingyue Cheng , Qi Liu , Zhi Li , Enhong Chen

Named Entity Recognition has traditionally been a key task in natural language processing, aiming to identify and extract important terms from unstructured text data. However, a notable challenge for contemporary deep-learning NER models…

Computation and Language · Computer Science 2025-08-19 Tzu-Chieh Chen , Wen-Yang Lin

Newly-introduced deep learning architectures, namely BERT, XLNet, RoBERTa and ALBERT, have been proved to be robust on several NLP tasks. However, the datasets trained on these architectures are fixed in terms of size and generalizability.…

Computation and Language · Computer Science 2020-09-29 Jean-Philippe Corbeil , Hadi Abdi Ghadivel

Named entity recognition (NER) is one of the best studied tasks in natural language processing. However, most approaches are not capable of handling nested structures which are common in many applications. In this paper we introduce a novel…

Computation and Language · Computer Science 2019-08-12 Joseph Fisher , Andreas Vlachos

In recent years, the amount of Cyber Security data generated in the form of unstructured texts, for example, social media resources, blogs, articles, and so on has exceptionally increased. Named Entity Recognition (NER) is an initial step…

Computation and Language · Computer Science 2020-04-02 Simran K , Sriram S , Vinayakumar R , Soman KP

Recognizing spans of biomedical concepts and their types (e.g., drug or gene) in free text, often called biomedical named entity recognition (NER), is a basic component of information extraction (IE) pipelines. Without a strong NER…

Computation and Language · Computer Science 2025-04-02 Motasem S Obeidat , Md Sultan Al Nahian , Ramakanth Kavuluru