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PyKOALA is an innovative Python-based library designed to provide a robust and flexible framework for Integral Field Spectroscopy (IFS) data reduction. By addressing the complexities of transforming raw measurements into scientifically…

PyArmadillo is a linear algebra library for the Python language, with the aim of closely mirroring the programming interface of the widely used Armadillo C++ library, which in turn is deliberately similar to Matlab. PyArmadillo hence…

Mathematical Software · Computer Science 2021-10-22 Jason Rumengan , Terry Yue Zhuo , Conrad Sanderson

Achieving the desired optical response from a multilayer thin-film structure over a broad range of wavelengths and angles of incidence can be challenging. An advanced thin-film structure can consist of multiple materials with different…

Computational Physics · Physics 2022-05-25 Alexander Luce , Ali Mahdavi , Florian Marquardt , Heribert Wankerl

Telegram is a popular platform for public communication, generating large amounts of messages through its channels. pytopicgram is a Python library that helps researchers collect, organize, and analyze these Telegram messages. The library…

Computation and Language · Computer Science 2025-04-09 J. Gómez-Romero , J. Cantón Correa , R. Pérez Mercado , F. Prados Abad , M. Molina-Solana , W. Fajardo

PyMOLfold is a flexible and open-source plugin designed to seamlessly integrate AI-based protein structure prediction and visualization within the widely used PyMOL molecular graphics system. By leveraging state-of-the-art protein folding…

Biomolecules · Quantitative Biology 2025-02-04 Colby T. Ford , Samee Ullah , Dinler Amaral Antunes , Tarsis Gesteira Ferreira

PyUnfold is a Python package for incorporating imperfections of the measurement process into a data analysis pipeline. In an ideal world, we would have access to the perfect detector: an apparatus that makes no error in measuring a desired…

Data Analysis, Statistics and Probability · Physics 2018-06-12 James Bourbeau , Zigfried Hampel-Arias

We present a new software pipeline -- PyMorph -- for automated estimation of structural parameters of galaxies. Both parametric fits through a two dimensional bulge disk decomposition as well as structural parameter measurements like…

Instrumentation and Methods for Astrophysics · Physics 2015-05-19 Vinu Vikram , Yogesh Wadadekar , Ajit K. Kembhavi , G. V. Vijayagovindan

In this work we present a method for generating random matrices describing electromagnetic scattering from disordered media containing dielectric particles with prescribed single particle scattering characteristics. Resulting scattering…

Optics · Physics 2022-12-15 Niall Byrnes , Matthew R. Foreman

Modern radio interferometric arrays offer high sensitivity, wide fields of view, and broad frequency coverage, but also pose significant data calibration challenges. Standard direction-independent calibration is insufficient to correct…

Instrumentation and Methods for Astrophysics · Physics 2026-05-18 Hao Peng , Fangxia An , Yuheng Zhang , Srikrishna Sekhar , Russ Taylor , Xianzhong Zheng , Yongming Liang

$\gamma$-ray pulsar halos, most likely formed by inverse Compton scattering of electrons and positrons propagating in the pulsar-surrounding interstellar medium with background photons, serve as an ideal probe for Galactic cosmic-ray…

High Energy Astrophysical Phenomena · Physics 2026-04-21 Kun Fang

The yaglm package aims to make the broader ecosystem of modern generalized linear models accessible to data analysts and researchers. This ecosystem encompasses a range of loss functions (e.g. linear, logistic, quantile regression),…

Computation · Statistics 2021-10-13 Iain Carmichael , Thomas Keefe , Naomi Giertych , Jonathan P Williams

Recently, the integration of advanced simulation technologies with artificial intelligence (AI) is revolutionizing science and engineering research. ChronoLlama introduces a novel framework that customizes the open-source LLMs, specifically…

Software Engineering · Computer Science 2025-01-09 Jingquan Wang , Harry Zhang , Khailanii Slaton , Shu Wang , Radu Serban , Jinlong Wu , Dan Negrut

Tools for computing detailed optically thick spectral line profiles out of local thermodynamic equilibrium have always been focused on speed, due to the large computational effort involved. With the Lightweaver framework, we have produced a…

Instrumentation and Methods for Astrophysics · Physics 2021-08-18 Christopher M J Osborne , Ivan Milić

Exascale computing delivers the raw power to simulate ever larger and more chemically realistic systems, but realizing this potential requires codes that can efficiently use thousands of processors. Our real-space multigrid (RMG) density…

Materials Science · Physics 2026-01-19 R. J. Morelock , S. Bagchi , E. L. Briggs , W. Lu , J. Bernholc , P. Ganesh

Multi-modal Large Language Models (MLLMs) have demonstrated strong capabilities in general-purpose perception and reasoning, but they still struggle with tasks that require spatial understanding of the 3D world. To address this, we…

Computer Vision and Pattern Recognition · Computer Science 2026-03-03 Zhanpeng Luo , Ce Zhang , Silong Yong , Cunxi Dai , Qianwei Wang , Haoxi Ran , Guanya Shi , Katia Sycara , Yaqi Xie

Common analysis techniques in multi-messenger astronomy involve hypothesis tests with unbinned log-likelihood (LLH) functions using data recorded in celestial coordinates to identify sources of high-energy cosmic particles in the Universe.…

Instrumentation and Methods for Astrophysics · Physics 2019-08-15 Martin Wolf

A major trend in academia and data science is the rapid adoption of Bayesian statistics for data analysis and modeling, leading to the development of probabilistic programming languages (PPL). A PPL provides a framework that allows users to…

Instrumentation and Methods for Astrophysics · Physics 2021-02-15 James. W. Nightingale , Richard G. Hayes , Matthew Griffiths

HYPERTILING is a high-performance Python library for the generation and visualization of regular hyperbolic lattices embedded in the Poincar\'e disk model. Using highly optimized, efficient algorithms, hyperbolic tilings with millions of…

Computational Physics · Physics 2024-06-27 Manuel Schrauth , Yanick Thurn , Florian Goth , Jefferson S. E. Portela , Dietmar Herdt , Felix Dusel

Development of scientific software involves tradeoffs between ease of use, generality, and performance. We describe the design of a general hyperbolic PDE solver that can be operated with the convenience of MATLAB yet achieves efficiency…

SMUTHI is a python package for the efficient and accurate simulation of electromagnetic scattering by one or multiple wavelength-scale objects in a planarly layered medium. The software combines the T-matrix method for individual particle…