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Stochastic neighbor embedding (SNE) and related nonlinear manifold learning algorithms achieve high-quality low-dimensional representations of similarity data, but are notoriously slow to train. We propose a generic formulation of embedding…
The graph embedding (GE) methods have been widely applied for dimensionality reduction of hyperspectral imagery (HSI). However, a major challenge of GE is how to choose proper neighbors for graph construction and explore the spatial…
The paper presents an O(N log N)-implementation of t-SNE -- an embedding technique that is commonly used for the visualization of high-dimensional data in scatter plots and that normally runs in O(N^2). The new implementation uses…
Central to the widespread use of t-distributed stochastic neighbor embedding (t-SNE) is the conviction that it produces visualizations whose structure roughly matches that of the input. To the contrary, we prove that (1) the strength of the…
Unsupervised machine learning has recently gained much attention in the field of molecular dynamics (MD). Particularly, dimensionality reduction techniques have been regularly employed to analyze large volumes of high-dimensional MD data to…
In many scientific disciplines structures in high-dimensional data have to be found, e.g., in stellar spectra, in genome data, or in face recognition tasks. In this work we present a novel approach to non-linear dimensionality reduction. It…
This study presents a pipeline leveraging t-Distributed Stochastic Neighbor Embedding (t-SNE) for interpretable visualizations of chirp features across diverse outcome scenarios. The dataset, comprising chirp-based temporal, spectral, and…
Dimensional data reduction methods are fundamental to explore and visualize large data sets. Basic requirements for unsupervised data exploration are simplicity, flexibility and scalability. However, current methods show complex…
Hyperspectral Imagery (and Remote Sensing in general) captured from UAVs or satellites are highly voluminous in nature due to the large spatial extent and wavelengths captured by them. Since analyzing these images requires a huge amount of…
Scientific datasets often have hierarchical structure: for example, in surveys, individual participants (samples) might be grouped at a higher level (units) such as their geographical region. In these settings, the interest is often in…
t-distributed Stochastic Neighborhood Embedding (t-SNE), a clustering and visualization method proposed by van der Maaten & Hinton in 2008, has rapidly become a standard tool in a number of natural sciences. Despite its overwhelming…
Neighbor embedding methods $t$-SNE and UMAP are the de facto standard for visualizing high-dimensional datasets. Motivated from entirely different viewpoints, their loss functions appear to be unrelated. In practice, they yield strongly…
In deep neural nets, lower level embedding layers account for a large portion of the total number of parameters. Tikhonov regularization, graph-based regularization, and hard parameter sharing are approaches that introduce explicit biases…
Generative Adversarial Networks (GANs) are powerful generative models that achieved strong results, mainly in the image domain. However, the training of GANs is not trivial, presenting some challenges tackled by different strategies.…
The task of dimensionality reduction and visualization of high-dimensional datasets remains a challenging problem since long. Modern high-throughput technologies produce newer high-dimensional datasets having multiple views with relatively…
We introduce an improved unsupervised clustering protocol specially suited for large-scale structured data. The protocol follows three steps: a dimensionality reduction of the data, a density estimation over the low dimensional…
Data visualization is important in understanding the characteristics of data that are difficult to see directly. It is used to visualize loss landscapes and optimization trajectories to analyze optimization performance. Popular optimization…
Most examinations of neural networks' learned latent spaces typically employ dimensionality reduction techniques such as t-SNE or UMAP. These methods distort the local neighborhood in the visualization, making it hard to distinguish the…
This work considers large-data asymptotics for t-distributed stochastic neighbor embedding (tSNE), a widely-used non-linear dimension reduction algorithm. We identify an appropriate continuum limit of the tSNE objective function, which can…
Widely used pipelines for analyzing high-dimensional data utilize two-dimensional visualizations. These are created, for instance, via t-distributed stochastic neighbor embedding (t-SNE). A crucial element of the t-SNE embedding procedure…