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Occupancy models involve both the probability a site is occupied and the probability occupancy is detected. The homogeneous occupancy model, where the occupancy and detection probabilities are the same at each site, admits an orthogonal…

Methodology · Statistics 2018-08-10 N. Karavarsamis , R. M. Huggins

We propose a modelling framework to analyse the stochastic behaviour of heterogeneous, multi-scale cellular populations. We illustrate our methodology with a particular example in which we study a population with an oxygen-regulated…

Biological Physics · Physics 2017-09-01 Roberto de la Cruz , Pilar Guerrero , Fabian Spill , Tomás Alarcón

We consider systems of many spatially distributed phase oscillators that interact with their neighbors. Each oscillator is allowed to have a different natural frequency, as well as a different response time to the signals it receives from…

Pattern Formation and Solitons · Physics 2015-05-27 Wai Shing Lee , Juan G. Restrepo , Edward Ott , Thomas M. Antonsen

Physical systems with many degrees of freedom can often be understood in terms of transitions between a small number of metastable states. For time-homogeneous systems with short-term memory these transitions are fully characterized by a…

Molecular Networks · Quantitative Biology 2015-06-03 Nils B. Becker , Pieter Rein ten Wolde

Complex Earth System Models are widely utilised to make conditional statements about the future climate under some assumptions about changes in future atmospheric greenhouse gas concentrations; these statements are often referred to as…

We study the time evolution of occupation numbers for interacting Fermi-particles in the situation when exact compound states are "chaotic". This situation is generic for highly excited many-particles states in heavy nuclei, complex atoms,…

Quantum Physics · Physics 2007-05-23 V. V. Flambaum , F. M. Izrailev

This paper considers the problem of learning, from samples, the dependency structure of a system of linear stochastic differential equations, when some of the variables are latent. In particular, we observe the time evolution of some…

Machine Learning · Computer Science 2012-05-02 Ali Jalali , Sujay Sanghavi

In this paper, we study a spatial model for dormancy in a random environment via a two-type branching random walk in continuous-time, where individuals switch between dormant and active states depending on the current state of a fluctuating…

Probability · Mathematics 2025-09-03 Helia Shafigh , Leo Tyrpak

We consider a population model in which the season alternates between winter and summer, and individuals can acquire mutations either that are advantageous in the summer and disadvantageous in the winter, or vice versa. Also, we assume that…

Populations and Evolution · Quantitative Biology 2025-12-09 Fernando Cordero , Adrián González Casanova , Jason Schweinsberg

We develop an Onsager-Machlup-type theory for nonequilibrium semi-Markov processes. Our main result is an exact large time asymptotics for the joint probability of the occupation times and the currents in the system, establishing some…

Statistical Mechanics · Physics 2015-05-13 Christian Maes , Karel Netočný , Bram Wynants

The psychology of the individual is continuously changing in nature, which has a significant influence on the evolutionary dynamics of populations. To study the influence of the continuously changing psychology of individuals on the…

Social and Information Networks · Computer Science 2025-02-11 Minyu Feng , Bin Pi , Liang-Jian Deng , Jürgen Kurths

The Basener-Ross system is a known model in Population Dynamics for the interaction of consumers and resources in an isolated habitat. For an extended version with time-dependent coefficients as a model of possible variations of the…

Classical Analysis and ODEs · Mathematics 2018-05-09 Faruk Güngör , Pedro J. Torres

Spatial and spatio-temporal single-structure point process models are widely used in epidemiology, biology, ecology, seismology... . However, most natural phenomena present multiple interaction structure or exhibit dependence at multiple…

Methodology · Statistics 2020-07-07 Morteza Raeisi , Florent Bonneu , Edith Gabriel

Decision models can combine information from different sources to simulate the long-term consequences of alternative strategies in the presence of uncertainty. A cohort state-transition model (cSTM) is a decision model commonly used in…

This article shows how to specify and construct a discrete, stochastic, continuous-time model specifically for ecological systems. The model is more broad than typical chemical kinetics models in two ways. First, using time-dependent hazard…

Populations and Evolution · Quantitative Biology 2015-06-30 Andrew J. Dolgert

Agent-based simulations have been used in modeling transportation systems for traffic management and passenger flows. In this work, we hope to shed light on the complex factors that influence transportation mode decisions within developing…

The temporal lag between actions and their long-term consequences makes credit assignment a challenge when learning goal-directed behaviors from data. Generative world models capture the distribution of future states an agent may visit,…

Machine Learning · Computer Science 2026-04-23 Aravind Venugopal , Jiayu Chen , Xudong Wu , Chongyi Zheng , Benjamin Eysenbach , Jeff Schneider

In the paper the rescaled occupation time fluctuation process of a certain empirical system is investigated. The system consists of particles evolving independently according to \alpha-stable motion in R^d, \alpha<d<2\alpha. The particles…

Probability · Mathematics 2011-09-02 Piotr Milos

Many biological systems regulate phenotypic heterogeneity as a fitness-maximising strategy in uncertain and dynamic environments. Analysis of such strategies is typically confined both to a discrete set of environmental conditions, and to a…

Populations and Evolution · Quantitative Biology 2025-07-02 Alexander P Browning , Sara Hamis

Time-independent scattering methods are widely employed to analyze transport in non-Hermitian systems. Their application, however, rests on a critical yet often overlooked assumption: that an incident wave is a pure superposition of…

Quantum Physics · Physics 2025-11-04 Chao Zheng