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Resetting is a renewal mechanism in which a process is intermittently repeated after a random or fixed time. This simple act of stop and repeat profoundly influences the behaviour of a system as exemplified by the emergence of…

Statistical Mechanics · Physics 2024-03-22 Saikat Santra , Prashant Singh

Feed-forward dynamics, which is well-known to have several important implications in nonlinear dynamical systems, frequently occurs in gene expression motifs, and has been well explored experimentally and mathematically. However, dependency…

Molecular Networks · Quantitative Biology 2024-01-09 Priya Chakraborty , Ushasi Roy , Sayantari Ghosh

Positive selection distorts the structure of genealogies and hence alters patterns of genetic variation within a population. Most analyses of these distortions focus on the signatures of hitchhiking due to hard or soft selective sweeps at a…

Populations and Evolution · Quantitative Biology 2012-08-17 Michael M. Desai , Aleksandra M. Walczak , Daniel S. Fisher

Natural ecosystems are characterized by striking diversity of form and functions and yet exhibit deep symmetries emerging across scales of space, time and organizational complexity. Species-area relationships and species-abundance…

Under constant selection, each trait has a fixed fitness, and small mutation rates allow populations to efficiently exploit the optimal trait. Therefore it is reasonable to expect mutation rates will evolve downwards. However, we find this…

Populations and Evolution · Quantitative Biology 2022-08-23 Brian Mintz , Feng Fu

Monte Carlo rendering algorithms often utilize correlations between pixels to improve efficiency and enhance image quality. For real-time applications in particular, repeated reservoir resampling offers a powerful framework to reuse samples…

Graphics · Computer Science 2022-11-02 Rohan Sawhney , Daqi Lin , Markus Kettunen , Benedikt Bitterli , Ravi Ramamoorthi , Chris Wyman , Matt Pharr

The iteration of rational maps is well-understood in dimension 1 but less so in higher dimensions. We study some maps on spaces of matrices which present a weak complexity with respect to the ring structure. First we give some properties of…

Dynamical Systems · Mathematics 2015-09-02 D. Cerveau , J. Déserti

A branching process in random environment $(Z_n, n \in \N)$ is a generalization of Galton Watson processes where at each generation the reproduction law is picked randomly. In this paper we give several results which belong to the class of…

Probability · Mathematics 2008-12-15 Vincent Bansaye , Julien Berestycki

When beneficial mutations are relatively common, competition between multiple unfixed mutations can reduce the rate of fixation in well-mixed asexual populations. We introduce a one dimensional model with a steady accumulation of beneficial…

Populations and Evolution · Quantitative Biology 2013-02-19 Jakub Otwinowski , Stefan Boettcher

In this work we study the process of mutant invasion on an example of a consumer-resource system with annual character of the behavior. Namely, individuals are active during seasons of fixed length separated by winter periods. All…

Optimization and Control · Mathematics 2010-06-15 Andrei R. Akhmetzhanov , Frederic Grognard , Ludovic Mailleret , Pierre Bernhard

Maintaining tissue homeostasis requires appropriate regulation of stem cell differentiation. The Waddington landscape posits that gene circuits in a cell form a potential landscape of different cell types, wherein cells follow attractors of…

Quantitative Methods · Quantitative Biology 2023-09-15 Rongsheng Huang , Qiaojun Situ , Jinzhi Lei

We consider a continuous-space and continuous-time diffusion process under resetting with memory. A particle resets to a position chosen from its trajectory in the past according to a memory kernel. Depending on the form of the memory…

Statistical Mechanics · Physics 2017-11-29 Denis Boyer , Martin R. Evans , Satya N. Majumdar

We discovered that certain patterns called injective patterns remain stable during the revolution process, allowing us to create many reversible CA simply by using them to design the revolution rules. By examining injective patterns, we…

Computational Complexity · Computer Science 2023-09-28 Defu Lin , Weilin Chen , Chen Wang , Junchi Ma , Chao Wang

Recent progress in photonics has led to a renewed interest in time-varying media that change on timescales comparable to the optical wave oscillation time. However, these studies typically overlook the role of material dispersion that will…

Quantum Physics · Physics 2019-07-19 Niclas Westerberg , Angus Prain , Daniele Faccio , Patrik Öhberg

This work is devoted to the study of the scaling, and the consequent power-law behavior, of the correlation function in a mutation-replication model known as the expansion-modification system. The latter is a biology inspired random…

Probability · Mathematics 2015-06-04 Raúl Salgado-García , Edgardo Ugalde

Motion planning in high-dimensional space is a challenging task. In order to perform dexterous manipulation in an unstructured environment, a robot with many degrees of freedom is usually necessary, which also complicates its motion…

Robotics · Computer Science 2021-08-03 Chao Liu , Mark Yim

We extend the notions of multipole and subsystem symmetries to more general {\it spatially modulated} symmetries. We uncover two instances with exponential and (quasi)-periodic modulations, and provide simple microscopic models in one, two…

Statistical Mechanics · Physics 2021-10-19 Pablo Sala , Julius Lehmann , Tibor Rakovszky , Frank Pollmann

A tumor can be thought of as an ecosystem, which critically means that we cannot just consider it as a collection of mutated cells but more as a complex system of many interacting cellular and microenvironmental elements. At its simplest, a…

Populations and Evolution · Quantitative Biology 2013-05-03 Jill Gallaher , Alexander R. A. Anderson

In response to the evolving landscape of data storage, researchers have increasingly explored non-traditional platforms, with DNA-based storage emerging as a cutting-edge solution. Our work is motivated by the potential of in-vivo DNA…

Information Theory · Computer Science 2024-01-09 Ohad Elishco

The unwelcome evolution of malignancy during cancer progression emerges through a selection process in a complex heterogeneous population structure. In the present work, we investigate evolutionary dynamics in a phenotypically heterogeneous…

Populations and Evolution · Quantitative Biology 2018-02-07 Ali Mahdipour Shirayeh , Kamran Kaveh , Mohammad Kohandel , Siv Sivaloganathan
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