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Related papers: Attention-Based Learning on Molecular Ensembles

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Motivated by the increasing popularity of attention mechanisms, we observe that popular convolutional (conv.) attention models like Squeeze-and-Excite (SE) and Convolutional Block Attention Module (CBAM) rely on expensive multi-layer…

Computer Vision and Pattern Recognition · Computer Science 2024-07-22 Majedaldein Almahasneh , Xianghua Xie , Adeline Paiement

Deep learning based computer vision fails to work when labeled images are scarce. Recently, Meta learning algorithm has been confirmed as a promising way to improve the ability of learning from few images for computer vision. However,…

Machine Learning · Computer Science 2018-11-27 Yunxiao Qin , Chenxu Zhao , Zezheng Wang , Junliang Xing , Jun Wan , Zhen Lei

Accurate and efficient prediction of the molecular properties of drugs is one of the fundamental problems in drug research and development. Recent advancements in representation learning have been shown to greatly improve the performance of…

Biomolecules · Quantitative Biology 2022-06-17 Hui Liu , Yibiao Huang , Xuejun Liu , Lei Deng

We present a robust learning algorithm to detect and handle collisions in 3D deforming meshes. Our collision detector is represented as a bilevel deep autoencoder with an attention mechanism that identifies colliding mesh sub-parts. We use…

Computer Vision and Pattern Recognition · Computer Science 2021-10-18 Qingyang Tan , Zherong Pan , Breannan Smith , Takaaki Shiratori , Dinesh Manocha

3D face alignment of monocular images is a crucial process in the recognition of faces with disguise.3D face reconstruction facilitated by alignment can restore the face structure which is helpful in detcting disguise interference.This…

Computer Vision and Pattern Recognition · Computer Science 2019-09-02 Lei Jiang Xiao-Jun Wu Josef Kittler

Molecular representations fundamentally shape how machine learning systems reason about molecular structure and physical properties. Most existing approaches adopt a discrete pipeline: molecules are encoded as sequences, graphs, or point…

A molecule's geometry, also known as conformation, is one of a molecule's most important properties, determining the reactions it participates in, the bonds it forms, and the interactions it has with other molecules. Conventional…

Machine Learning · Computer Science 2020-01-01 Elman Mansimov , Omar Mahmood , Seokho Kang , Kyunghyun Cho

We propose augmenting deep neural networks with an attention mechanism for the visual object detection task. As perceiving a scene, humans have the capability of multiple fixation points, each attended to scene content at different…

Computer Vision and Pattern Recognition · Computer Science 2017-02-07 Kota Hara , Ming-Yu Liu , Oncel Tuzel , Amir-massoud Farahmand

This paper addresses the challenge of perceiving complete object shapes through visual perception. While prior studies have demonstrated encouraging outcomes in segmenting the visible parts of objects within a scene, amodal segmentation, in…

Robotics · Computer Science 2024-08-07 Jinyu Zhang , Yongchong Gu , Jianxiong Gao , Haitao Lin , Qiang Sun , Xinwei Sun , Xiangyang Xue , Yanwei Fu

We propose a novel technique for producing high-quality 3D models that match a given target object image or scan. Our method is based on retrieving an existing shape from a database of 3D models and then deforming its parts to match the…

Computer Vision and Pattern Recognition · Computer Science 2021-04-14 Mikaela Angelina Uy , Vladimir G. Kim , Minhyuk Sung , Noam Aigerman , Siddhartha Chaudhuri , Leonidas Guibas

Accurate identification of protein binding sites is crucial for understanding biomolecular interaction mechanisms and for the rational design of drug targets. Traditional predictive methods often struggle to balance prediction accuracy with…

Machine Learning · Computer Science 2026-01-06 Weisen Yang , Hanqing Zhang , Wangren Qiu , Xuan Xiao , Weizhong Lin

Fine-grained visual recognition typically depends on modeling subtle difference from object parts. However, these parts often exhibit dramatic visual variations such as occlusions, viewpoints, and spatial transformations, making it hard to…

Computer Vision and Pattern Recognition · Computer Science 2017-09-19 Lin Wu , Yang Wang

Unsupervised clustering has broad applications in data stratification, pattern investigation and new discovery beyond existing knowledge. In particular, clustering of bioactive molecules facilitates chemical space mapping,…

We address the challenging problem of learning motion representations using deep models for video recognition. To this end, we make use of attention modules that learn to highlight regions in the video and aggregate features for…

Computer Vision and Pattern Recognition · Computer Science 2020-08-18 Miao Liu , Xin Chen , Yun Zhang , Yin Li , James M. Rehg

Network embedding represents nodes in a continuous vector space and preserves structure information from the Network. Existing methods usually adopt a "one-size-fits-all" approach when concerning multi-scale structure information, such as…

Machine Learning · Computer Science 2018-03-28 Lei Sang , Min Xu , Shengsheng Qian , Xindong Wu

Attention mechanism has recently attracted increasing attentions in the field of facial action unit (AU) detection. By finding the region of interest of each AU with the attention mechanism, AU-related local features can be captured. Most…

Computer Vision and Pattern Recognition · Computer Science 2019-10-21 Zhiwen Shao , Zhilei Liu , Jianfei Cai , Yunsheng Wu , Lizhuang Ma

Modeling the relationship between chemical structure and molecular activity is a key goal in drug development. Many benchmark tasks have been proposed for molecular property prediction, but these tasks are generally aimed at specific,…

Quantitative Methods · Quantitative Biology 2020-10-05 Samuel G. Finlayson , Matthew B. A. McDermott , Alex V. Pickering , Scott L. Lipnick , Isaac S. Kohane

Modern large language models become multimodal, analyzing various data formats like text and images. While fine-tuning is effective for adapting these multimodal language models (MLMs) to downstream tasks, full fine-tuning is…

Computation and Language · Computer Science 2025-12-01 Alexander Sergeev , Evgeny Kotelnikov

Molecular representations are inherently task-dependent, yet most pre-trained molecular encoders are not. Task conditioning promises representations that reorganize based on task descriptions, but existing approaches rely on expensive…

Chemical Physics · Physics 2026-02-05 Gordan Prastalo , Kevin Maik Jablonka

Current automatic vision systems face two major challenges: scalability and extreme variability of appearance. First, the computational time required to process an image typically scales linearly with the number of pixels in the image,…

Computer Vision and Pattern Recognition · Computer Science 2014-05-22 Marc'Aurelio Ranzato