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Pairwise alignment of DNA sequencing data is a ubiquitous task in bioinformatics and typically represents a heavy computational burden. A standard approach to speed up this task is to compute "sketches" of the DNA reads (typically via…

Information Theory · Computer Science 2021-07-12 Ilan Shomorony , Govinda M. Kamath

We consider sketching algorithms which first compress data by multiplication with a random sketch matrix, and then apply the sketch to quickly solve an optimization problem, e.g., low-rank approximation and regression. In the learning-based…

Machine Learning · Computer Science 2024-04-12 Yi Li , Honghao Lin , Simin Liu , Ali Vakilian , David P. Woodruff

In order to compute fast approximations to the singular value decompositions (SVD) of very large matrices, randomized sketching algorithms have become a leading approach. However, a key practical difficulty of sketching an SVD is that the…

Machine Learning · Statistics 2020-03-12 Miles E. Lopes , N. Benjamin Erichson , Michael W. Mahoney

We consider the estimation of the transition matrix in the high-dimensional time-varying vector autoregression (TV-VAR) models. Our model builds on a general class of locally stationary VAR processes that evolve smoothly in time. We propose…

Statistics Theory · Mathematics 2017-10-03 Xin Ding , Ziyi Qiu , Xiaohui Chen

The compressive learning framework reduces the computational cost of training on large-scale datasets. In a sketching phase, the data is first compressed to a lightweight sketch vector, obtained by mapping the data samples through a…

Machine Learning · Statistics 2022-04-20 Vincent Schellekens , Laurent Jacques

We consider sparse matrix estimation where the goal is to estimate an $n\times n$ matrix from noisy observations of a small subset of its entries. We analyze the estimation error of the popularly utilized collaborative filtering algorithm…

Statistics Theory · Mathematics 2025-07-29 Christian Borgs , Jennifer Chayes , Devavrat Shah , Christina Lee Yu

We consider sketching algorithms which first quickly compress data by multiplication with a random sketch matrix, and then apply the sketch to quickly solve an optimization problem, e.g., low rank approximation. In the learning-based…

Machine Learning · Computer Science 2021-06-08 Simin Liu , Tianrui Liu , Ali Vakilian , Yulin Wan , David P. Woodruff

Recently, a class of algorithms combining classical fixed point iterations with repeated random sparsification of approximate solution vectors has been successfully applied to eigenproblems with matrices as large as $10^{108} \times…

Numerical Analysis · Mathematics 2025-04-28 Jonathan Weare , Robert J. Webber

Sketching is a dimensionality reduction technique where one compresses a matrix by linear combinations that are chosen at random. A line of work has shown how to sketch the Hessian to speed up each iteration in a second order method, but…

Machine Learning · Computer Science 2021-10-07 Yi Li , Honghao Lin , David P. Woodruff

The unsupervised learning of community structure, in particular the partitioning vertices into clusters or communities, is a canonical and well-studied problem in exploratory graph analysis. However, like most graph analyses the…

Machine Learning · Computer Science 2020-07-27 Benjamin W. Priest , Alec Dunton , Geoffrey Sanders

Motivated by recent developments in serverless systems for large-scale computation as well as improvements in scalable randomized matrix algorithms, we develop OverSketched Newton, a randomized Hessian-based optimization algorithm to solve…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-08-28 Vipul Gupta , Swanand Kadhe , Thomas Courtade , Michael W. Mahoney , Kannan Ramchandran

We present a quadratic estimator that detects and reconstructs spatially-varying multiplicative ($m-$) bias in weak lensing shear measurements, by exploiting the $EB$ mode coupling that it generates. The method combines $E$ and $B$ modes…

Cosmology and Nongalactic Astrophysics · Physics 2026-04-08 Konstantinos Tanidis , David Alonso , Lance Miller , Joachim Harnois-Déraps

Suppose an $n \times d$ design matrix in a linear regression problem is given, but the response for each point is hidden unless explicitly requested. The goal is to sample only a small number $k \ll n$ of the responses, and then produce a…

Machine Learning · Computer Science 2018-09-06 Michał Dereziński , Manfred K. Warmuth , Daniel Hsu

Linear regression is a classic method of data analysis. In recent years, sketching -- a method of dimension reduction using random sampling, random projections, or both -- has gained popularity as an effective computational approximation…

Machine Learning · Statistics 2020-08-04 Jocelyn T. Chi , Ilse C. F. Ipsen

Pseudoinverses are ubiquitous tools for handling over- and under-determined systems of equations. For computational efficiency, sparse pseudoinverses are desirable. Recently, sparse left and right pseudoinverses were introduced, using…

Numerical Analysis · Mathematics 2016-06-23 Victor K. Fuentes , Marcia Fampa , Jon Lee

Many real-world data sets are sparse or almost sparse. One method to measure this for a matrix $A\in \mathbb{R}^{n\times n}$ is the \emph{numerical sparsity}, denoted $\mathsf{ns}(A)$, defined as the minimum $k\geq 1$ such that…

Data Structures and Algorithms · Computer Science 2021-07-06 Vladimir Braverman , Robert Krauthgamer , Aditya Krishnan , Shay Sapir

Given a symmetric matrix $A$, we show from the simple sketch $GAG^T$, where $G$ is a Gaussian matrix with $k = O(1/\epsilon^2)$ rows, that there is a procedure for approximating all eigenvalues of $A$ simultaneously to within $\epsilon…

Data Structures and Algorithms · Computer Science 2023-04-20 William Swartworth , David P. Woodruff

In Compressed Sensing, a real-valued sparse vector has to be recovered from an underdetermined system of linear equations. In many applications, however, the elements of the sparse vector are drawn from a finite set. Adapted algorithms…

Information Theory · Computer Science 2017-03-03 Susanne Sparrer , Robert F. H. Fischer

Given a full rank matrix $X$ with more columns than rows, consider the task of estimating the pseudo inverse $X^+$ based on the pseudo inverse of a sampled subset of columns (of size at least the number of rows). We show that this is…

Machine Learning · Computer Science 2018-06-07 Michał Dereziński , Manfred K. Warmuth

We present the framework of slowly varying regression under sparsity, allowing sparse regression models to exhibit slow and sparse variations. The problem of parameter estimation is formulated as a mixed-integer optimization problem. We…

Machine Learning · Computer Science 2023-11-14 Dimitris Bertsimas , Vassilis Digalakis , Michael Linghzi Li , Omar Skali Lami
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