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Related papers: Biomedical Named Entity Recognition at Scale

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Named entity recognition (NER) and relation extraction (RE) are two important tasks in information extraction and retrieval (IE \& IR). Recent work has demonstrated that it is beneficial to learn these tasks jointly, which avoids the…

Computation and Language · Computer Science 2020-01-01 John Giorgi , Xindi Wang , Nicola Sahar , Won Young Shin , Gary D. Bader , Bo Wang

Biomedical queries have become increasingly prevalent in web searches, reflecting the growing interest in accessing biomedical literature. Despite recent research on large-language models (LLMs) motivated by endeavours to attain generalized…

Computation and Language · Computer Science 2024-08-06 Ankan Mullick , Mukur Gupta , Pawan Goyal

Named Entity Recognition (NER) is a foundational NLP task that aims to provide class labels like Person, Location, Organisation, Time, and Number to words in free text. Named Entities can also be multi-word expressions where the additional…

Computation and Language · Computer Science 2022-05-02 Rudra Murthy , Pallab Bhattacharjee , Rahul Sharnagat , Jyotsana Khatri , Diptesh Kanojia , Pushpak Bhattacharyya

Open Named Entity Recognition (NER), which involves identifying arbitrary types of entities from arbitrary domains, remains challenging for Large Language Models (LLMs). Recent studies suggest that fine-tuning LLMs on extensive NER data can…

This work investigates multiple approaches to Named Entity Recognition (NER) for text in Electronic Health Record (EHR) data. In particular, we look into the application of (i) rule-based, (ii) deep learning and (iii) transfer learning…

Named Entity Recognition (NER) is a key NLP task, which is all the more challenging on Web and user-generated content with their diverse and continuously changing language. This paper aims to quantify how this diversity impacts…

Computation and Language · Computer Science 2017-03-09 Isabelle Augenstein , Leon Derczynski , Kalina Bontcheva

Lately, instruction-based techniques have made significant strides in improving performance in few-shot learning scenarios. They achieve this by bridging the gap between pre-trained language models and fine-tuning for specific downstream…

Information Retrieval · Computer Science 2024-01-25 Hiranmai Sri Adibhatla , Pavan Baswani , Manish Shrivastava

In this work, we address the NER problem by splitting it into two logical sub-tasks: (1) Span Detection which simply extracts entity mention spans irrespective of entity type; (2) Span Classification which classifies the spans into their…

Computation and Language · Computer Science 2023-11-01 Jatin Arora , Youngja Park

Named Entity Recognition (NER) is a fundamental problem in natural language processing (NLP). However, the task of extracting longer entity spans (e.g., awards) from extended texts (e.g., homepages) is barely explored. Current NER methods…

Computation and Language · Computer Science 2025-02-12 Yelin Chen , Fanjin Zhang , Jie Tang

Named Entity Recognition (NER) is a critical task that requires substantial annotated data, making it challenging in low-resource scenarios where label acquisition is expensive. While zero-shot and instruction-tuned approaches have made…

Computation and Language · Computer Science 2025-10-21 Nanda Kumar Rengarajan , Jun Yan , Chun Wang

Named entity recognition is a key component of Information Extraction (IE), particularly in scientific domains such as biomedicine and chemistry, where large language models (LLMs), e.g., ChatGPT, fall short. We investigate the…

Computation and Language · Computer Science 2024-04-02 Hongyi Liu , Qingyun Wang , Payam Karisani , Heng Ji

India's rich cultural and linguistic diversity poses various challenges in the domain of Natural Language Processing (NLP), particularly in Named Entity Recognition (NER). NER is a NLP task that aims to identify and classify tokens into…

Computation and Language · Computer Science 2025-02-07 Mohammed Amaan Dhamaskar , Rasika Ransing

The scientific literature contains a wealth of cutting-edge knowledge in the field of materials science, as well as useful data (e.g., numerical data from experimental results, material properties and structure). These data are critical for…

Information Retrieval · Computer Science 2023-05-30 M. Saef Ullah Miah , Junaida Sulaiman

Named entity recognition has been extensively studied on English news texts. However, the transfer to other domains and languages is still a challenging problem. In this paper, we describe the system with which we participated in the first…

Computation and Language · Computer Science 2020-07-03 Lukas Lange , Heike Adel , Jannik Strötgen

As more and more Arabic texts emerged on the Internet, extracting important information from these Arabic texts is especially useful. As a fundamental technology, Named entity recognition (NER) serves as the core component in information…

Computation and Language · Computer Science 2023-08-09 Xiaoye Qu , Yingjie Gu , Qingrong Xia , Zechang Li , Zhefeng Wang , Baoxing Huai

We present a simple yet effective method to train a named entity recognition (NER) model that operates on business telephone conversation transcripts that contain noise due to the nature of spoken conversation and artifacts of automatic…

Computation and Language · Computer Science 2022-09-29 Xue-Yong Fu , Cheng Chen , Md Tahmid Rahman Laskar , Shashi Bhushan TN , Simon Corston-Oliver

Named entity recognition (NER) is frequently addressed as a sequence classification task where each input consists of one sentence of text. It is nevertheless clear that useful information for the task can often be found outside of the…

Computation and Language · Computer Science 2020-12-18 Jouni Luoma , Sampo Pyysalo

Named Entity Recognition (NER) plays an important role in a wide range of natural language processing tasks, such as relation extraction, question answering, etc. However, previous studies on NER are limited to particular genres, using…

Computation and Language · Computer Science 2020-11-03 Mengdi Zhu , Zheye Deng , Wenhan Xiong , Mo Yu , Ming Zhang , William Yang Wang

Developing high-performance entity normalization algorithms that can alleviate the term variation problem is of great interest to the biomedical community. Although deep learning-based methods have been successfully applied to biomedical…

Information Retrieval · Computer Science 2019-08-12 Zongcheng Ji , Qiang Wei , Hua Xu

In recent years, Deep Learning (DL) models are becoming important due to their demonstrated success at overcoming complex learning problems. DL models have been applied effectively for different Natural Language Processing (NLP) tasks such…

Computation and Language · Computer Science 2019-11-06 Hamada A. Nayel , Shashrekha H. L