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Aligning a sequence to a walk in a labeled graph is a problem of fundamental importance to Computational Biology. For finding a walk in an arbitrary graph with $|E|$ edges that exactly matches a pattern of length $m$, a lower bound based on…

Data Structures and Algorithms · Computer Science 2022-02-01 Daniel Gibney , Sharma V. Thankachan , Srinivas Aluru

Hypergraph data are often projected onto a weighted graph by constructing an adjacency matrix whose $(i,j)$ entry counts the number of hyperedges containing both nodes $i$ and $j$. This reduction is computationally convenient, but it can…

Statistics Theory · Mathematics 2026-04-20 Kalle Alaluusua , B. R. Vinay Kumar

Maximal clique enumeration is a fundamental graph mining task, but its utility is often limited by computational intractability and highly redundant output. To address these challenges, we introduce \emph{$\rho$-dense aggregators}, a novel…

Data Structures and Algorithms · Computer Science 2025-12-04 Noga Alon , Sabyasachi Basu , Shweta Jain , Haim Kaplan , Jakub Łącki , Blair D. Sullivan

Inference problems with conjectured statistical-computational gaps are ubiquitous throughout modern statistics, computer science and statistical physics. While there has been success evidencing these gaps from the failure of restricted…

Computational Complexity · Computer Science 2020-06-30 Matthew Brennan , Guy Bresler

Given query access to an undirected graph $G$, we consider the problem of computing a $(1\pm\epsilon)$-approximation of the number of $k$-cliques in $G$. The standard query model for general graphs allows for degree queries, neighbor…

Data Structures and Algorithms · Computer Science 2018-11-13 Talya Eden , Dana Ron , C. Seshadhri

An upper dominating set is a minimal dominating set in a graph. In the \textsc{Upper Dominating Set} problem, the goal is to find an upper dominating set of maximum size. We study the complexity of parameterized algorithms for \textsc{Upper…

Data Structures and Algorithms · Computer Science 2021-01-20 Louis Dublois , Michael Lampis , Vangelis Th. Paschos

The strong exponential-time hypothesis (SETH) is a commonly used conjecture in the field of complexity theory. It states that CNF formulas cannot be analyzed for satisfiability with a speedup over exhaustive search. This hypothesis and its…

Quantum Physics · Physics 2019-11-15 Harry Buhrman , Subhasree Patro , Florian Speelman

We prove that with high probability over the choice of a random graph $G$ from the Erd\H{o}s-R\'enyi distribution $G(n,1/2)$, the $n^{O(d)}$-time degree $d$ Sum-of-Squares semidefinite programming relaxation for the clique problem will give…

Computational Complexity · Computer Science 2016-04-13 Boaz Barak , Samuel B. Hopkins , Jonathan Kelner , Pravesh K. Kothari , Ankur Moitra , Aaron Potechin

In the $k$-edge-connected spanning subgraph ($k$ECSS) problem, our goal is to compute a minimum-cost sub-network that is resilient against up to $k$ link failures: Given an $n$-node $m$-edge graph with a cost function on the edges, our goal…

The maximum common subtree isomorphism problem asks for the largest possible isomorphism between subtrees of two given input trees. This problem is a natural restriction of the maximum common subgraph problem, which is ${\sf NP}$-hard in…

Data Structures and Algorithms · Computer Science 2016-08-23 Andre Droschinsky , Nils M. Kriege , Petra Mutzel

The Strong Lottery Ticket Hypothesis (SLTH) stipulates the existence of a subnetwork within a sufficiently overparameterized (dense) neural network that -- when initialized randomly and without any training -- achieves the accuracy of a…

Machine Learning · Computer Science 2023-02-17 Damien Ferbach , Christos Tsirigotis , Gauthier Gidel , Avishek , Bose

We study the problem of approximating the number of $k$-cliques in a graph when given query access to the graph. We consider the standard query model for general graphs via (1) degree queries, (2) neighbor queries and (3) pair queries. Let…

Data Structures and Algorithms · Computer Science 2018-03-14 Talya Eden , Dana Ron , C. Seshadhri

Many natural computational problems, including e.g. Max Weight Independent Set, Feedback Vertex Set, or Vertex Planarization, can be unified under an umbrella of finding the largest sparse induced subgraph, that satisfies some property…

Data Structures and Algorithms · Computer Science 2026-05-19 Maria Chudnovsky , Jadwiga Czyżewska , Kacper Kluk , Marcin Pilipczuk , Paweł Rzążewski

We study the precedence-constrained resource scheduling problem [SICOMP'75]. There are $n$ jobs where each job takes a certain time to finish and has a resource requirement throughout the execution time. There are precedence among the jobs.…

Data Structures and Algorithms · Computer Science 2025-09-03 Rathish Das , Hao Sun

The Strong Exponential Time Hypothesis (SETH) asserts that for every $\varepsilon>0$ there exists $k$ such that $k$-SAT requires time $(2-\varepsilon)^n$. The field of fine-grained complexity has leveraged SETH to prove quite tight…

Computational Complexity · Computer Science 2022-11-30 Tatiana Belova , Alexander Golovnev , Alexander S. Kulikov , Ivan Mihajlin , Denil Sharipov

The congested clique model of distributed computing has been receiving attention as a model for densely connected distributed systems. While there has been significant progress on the side of upper bounds, we have very little in terms of…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-04-25 Janne H. Korhonen , Jukka Suomela

We study the approximability of two related problems on graphs with $n$ nodes and $m$ edges: $n$-Pairs Shortest Paths ($n$-PSP), where the goal is to find a shortest path between $O(n)$ prespecified pairs, and All Node Shortest Cycles…

Data Structures and Algorithms · Computer Science 2022-09-21 Mina Dalirrooyfard , Ce Jin , Virginia Vassilevska Williams , Nicole Wein

Embeddings of graphs into distributions of trees that preserve distances in expectation are a cornerstone of many optimization algorithms. Unfortunately, online or dynamic algorithms which use these embeddings seem inherently randomized and…

Data Structures and Algorithms · Computer Science 2021-02-11 Bernhard Haeupler , D Ellis Hershkowitz , Goran Zuzic

The concept of $k$-defective clique, a relaxation of clique by allowing up-to $k$ missing edges, has been receiving increasing interests recently. Although the problem of finding the maximum $k$-defective clique is NP-hard, several…

Data Structures and Algorithms · Computer Science 2024-03-13 Lijun Chang

We give a 2-approximation algorithm for Non-Uniform Sparsest Cut that runs in time $n^{O(k)}$, where $k$ is the treewidth of the graph. This improves on the previous $2^{2^k}$-approximation in time $\poly(n) 2^{O(k)}$ due to Chlamt\'a\v{c}…

Data Structures and Algorithms · Computer Science 2013-05-08 Anupam Gupta , Kunal Talwar , David Witmer
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