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LRM-Trees are an elegant way to partition a sequence of values into sorted consecutive blocks, and to express the relative position of the first element of each block within a previous block. They were used to encode ordinal trees and to…

Data Structures and Algorithms · Computer Science 2010-09-30 Jérémy Barbay , Johannes Fischer

The wavelet tree has become a very useful data structure to efficiently represent and query large volumes of data in many different domains, from bioinformatics to geographic information systems. One problem with wavelet trees is their…

Data Structures and Algorithms · Computer Science 2016-10-20 José Fuentes-Sepúlveda , Erick Elejalde , Leo Ferres , Diego Seco

In this paper, we provide a polynomial time algorithm to calculate the probability of a {\it ranked} gene tree topology for a given species tree, where a ranked tree topology is a tree topology with the internal vertices being ordered. The…

Populations and Evolution · Quantitative Biology 2012-03-02 Tanja Stadler , James H. Degnan

Efficient index structures for fast approximate nearest neighbor queries are required in many applications such as recommendation systems. In high-dimensional spaces, many conventional methods suffer from excessive usage of memory and slow…

Work introduces a hierarchical binary tree-based reduction that replaces standard self-attention. The core idea is to use a recursive Gated Linear Unit merge operation, achieving O(n) total merge operations O(log n) parallel depth O(n d^2)…

Machine Learning · Computer Science 2026-03-03 Igor Berezkin

Given a graph, we can form a spanning forest by first sorting the edges in some order, and then only keep edges incident to a vertex which is not incident to any previous edge. The resulting forest is dependent on the ordering of the edges,…

Combinatorics · Mathematics 2018-02-16 Steve Butler , Misa Hamanaka , Marie Hardt

Path partition problems on trees have found various applications. In this paper, we present an $O(n \log n)$ time algorithm for solving the following variant of path partition problem: given a rooted tree of $n$ nodes $1, \ldots, n$, where…

Data Structures and Algorithms · Computer Science 2025-03-17 Ruixi Luo , Taikun Zhu , Kai Jin

Dynamic trees are mixtures of tree structured belief networks. They solve some of the problems of fixed tree networks at the cost of making exact inference intractable. For this reason approximate methods such as sampling or mean field…

Machine Learning · Computer Science 2013-01-18 Amos J. Storkey

Let $P$ and $S$ be two disjoint sets of $n$ and $m$ points in the plane, respectively. We consider the problem of computing a Steiner tree whose Steiner vertices belong to $S$, in which each point of $P$ is a leaf, and whose longest edge…

Computational Geometry · Computer Science 2013-05-02 Ahmad Biniaz , Anil Maheshwari , Michiel Smid

In the field of algorithmic analysis, one of the more well-known exercises is the subset sum problem. That is, given a set of integers, determine whether one or more integers in the set can sum to a target value. Aside from the brute-force…

Data Structures and Algorithms · Computer Science 2016-05-09 Daniel Shea

We revisit the \textsc{$k$-Secluded Tree} problem. Given a vertex-weighted undirected graph $G$, its objective is to find a maximum-weight induced subtree $T$ whose open neighborhood has size at most $k$. We present a fixed-parameter…

Data Structures and Algorithms · Computer Science 2022-06-27 Huib Donkers , Bart M. P. Jansen , Jari J. H. de Kroon

We develop the first fully dynamic algorithm that maintains a decision tree over an arbitrary sequence of insertions and deletions of labeled examples. Given $\epsilon > 0$ our algorithm guarantees that, at every point in time, every node…

Machine Learning · Computer Science 2022-12-02 Marco Bressan , Gabriel Damay , Mauro Sozio

In this paper we propose a dynamic data structure that supports efficient algorithms for updating and querying singly connected Bayesian networks (causal trees and polytrees). In the conventional algorithms, new evidence in absorbed in time…

Artificial Intelligence · Computer Science 2014-08-08 Arthur L. Delcher , Adam J. Grove , Simon Kasif , Judea Pearl

We obtain new non-asymptotic tail bounds for the height of uniformly random trees with a given degree sequence, simply generated trees and conditioned Bienaym\'e trees (the family trees of branching processes), in the process settling three…

Probability · Mathematics 2024-03-11 Louigi Addario-Berry , Serte Donderwinkel

Recently proposed budding tree is a decision tree algorithm in which every node is part internal node and part leaf. This allows representing every decision tree in a continuous parameter space, and therefore a budding tree can be jointly…

Machine Learning · Computer Science 2014-12-22 Ozan İrsoy , Ethem Alpaydın

Motivated by classic tree algorithms, in 1995 we designed a bottom-up $O(n)$ algorithm to compute the determinant of a tree's adjacency matrix $A$. In 2010 an $O(n)$ algorithm was found for constructing a diagonal matrix congruent to $A +…

Combinatorics · Mathematics 2017-11-09 David P. Jacobs , Vilmar Trevisan

We introduce a new family of priority-queue data structures: partition-based simple heaps. The structures consist of $O(\log n)$ doubly-linked lists; order is enforced among data in different lists, but the individual lists are unordered.…

Data Structures and Algorithms · Computer Science 2026-03-03 Gerth Stølting Brodal , John Iacono , Casper Moldrup Rysgaard , Sebastian Wild

We construct generating trees with one, two, and three labels for some classes of permutations avoiding generalized patterns of length 3 and 4. These trees are built by adding at each level an entry to the right end of the permutation,…

Combinatorics · Mathematics 2007-08-01 Sergi Elizalde

An upward drawing of a tree is a drawing such that no parents are below their children. It is order-preserving if the edges to children appear in prescribed order around each node. Chan showed that any tree has an upward order-preserving…

Computational Geometry · Computer Science 2015-11-05 Therese Biedl

We give an $n^{O(\log\log n)}$-time membership query algorithm for properly and agnostically learning decision trees under the uniform distribution over $\{\pm 1\}^n$. Even in the realizable setting, the previous fastest runtime was…

Data Structures and Algorithms · Computer Science 2021-11-02 Guy Blanc , Jane Lange , Mingda Qiao , Li-Yang Tan
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