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partycls is a Python framework for cluster analysis of systems of interacting particles. By grouping particles that share similar structural or dynamical properties, partycls enables rapid and unsupervised exploration of the system's…

Computational Physics · Physics 2021-11-22 Joris Paret , Daniele Coslovich

Scatterplots are a common tool for exploring multidimensional datasets, especially in the form of scatterplot matrices (SPLOMs). However, scatterplots suffer from overplotting when categorical variables are mapped to one or two axes, or the…

Human-Computer Interaction · Computer Science 2025-11-18 Deokgun Park , Sung-Hee Kim , Niklas Elmqvist

We present a new comprehensive theory for explaining, exploring, and using pattern as a visual variable in visualization. Although patterns have long been used for data encoding and continue to be valuable today, their conceptual…

Human-Computer Interaction · Computer Science 2026-01-30 Tingying He , Jason Dykes , Petra Isenberg , Tobias Isenberg

We present an integrated approach for creating and assigning color palettes to different visualizations such as multi-class scatterplots, line, and bar charts. While other methods separate the creation of colors from their assignment, our…

Motivation: Revealing structural variations across sequences of closely related individuals or species is crucial for understanding their diversification mechanisms and roles. Results: We developed PatchWorkPlot, a tool for visualization of…

Quantitative Methods · Quantitative Biology 2025-03-27 Mariia Pospelova , Yana Safonova

The object-oriented class is, in general, the most utilized element in programming and modeling. It is employed throughout the software development process, from early domain analysis phases to later maintenance phases. A class diagram…

Software Engineering · Computer Science 2017-10-03 Sabah Al-Fedaghi

Path calculus, or graphical linear algebra, is a string diagram calculus for the category of matrices over a base ring. It is the usual string diagram calculus for a symmetric monoidal category, where the monoidal product is the direct sum…

Quantum Physics · Physics 2023-07-07 Simon Burton

We introduce geoplotlib, an open-source python toolbox for visualizing geographical data. geoplotlib supports the development of hardware-accelerated interactive visualizations in pure python, and provides implementations of dot maps,…

Graphics · Computer Science 2016-08-08 Andrea Cuttone , Sune Lehmann , Jakob Eg Larsen

In these lecture notes, a selection of frequently required statistical tools will be introduced and illustrated. They allow to post-process data that stem from, e.g., large-scale numerical simulations (aka sequence of random experiments).…

Data Analysis, Statistics and Probability · Physics 2012-07-26 O. Melchert

This paper presents a toolkit for spreadsheet visualization based on logical areas, semantic classes and data modules. Logical areas, semantic classes and data modules are abstract representations of spreadsheet programs that are meant to…

Human-Computer Interaction · Computer Science 2008-02-28 Markus Clermont

Given a proper edge-coloring of a loopless multigraph, the palette of a vertex is defined as the set of colors of the edges which are incident with it. The palette index of a multigraph is defined as the minimum number of distinct palettes…

Combinatorics · Mathematics 2018-01-08 Maddalena Avesani , Arrigo Bonisoli , Giuseppe Mazzuoccolo

Information visualization is essential in making sense out of large data sets. Often, high-dimensional data are visualized as a collection of points in 2-dimensional space through dimensionality reduction techniques. However, these…

Computational Geometry · Computer Science 2009-07-16 Emden R. Gansner , Yifan Hu , Stephen G. Kobourov

We present python libraries for Feynman graphs manipulation. The key feature of these libraries is usage of generalization of graph representation offered by B. G. Nickel et al. In this approach graph is represented in some unique…

High Energy Physics - Phenomenology · Physics 2014-10-03 D. Batkovich , Yu. Kirienko , M. Kompaniets , S. Novikov

Big Data involves both a large number of events but also many variables. This paper will concentrate on the challenge presented by the large number of variables in a Big Dataset. It will start with a brief review of exploratory data…

Applications · Statistics 2019-07-24 S. J. Watts , L. Crow

Data visualization is the process by which data of any size or dimensionality is processed to produce an understandable set of data in a lower dimensionality, allowing it to be manipulated and understood more easily by people. The goal of…

Graphics · Computer Science 2021-07-06 Alexander Kiefer , Md. Khaledur Rahman

When we think of model ensembling or ensemble modeling, there are many possibilities that come to mind in different disciplines. For example, one might think of a set of descriptions of a phenomenon in the world, perhaps a time series or a…

With the rise of the open data movement a lot of statistical data has been made publicly available by governments, statistical offices and other organizations. First efforts to visualize are made by the data providers themselves. Data…

Human-Computer Interaction · Computer Science 2011-10-17 Daniel Hienert , Benjamin Zapilko , Philipp Schaer , Brigitte Mathiak

A taxonomy is a standardized framework to classify and organize items into categories. Hierarchical taxonomies are ubiquitous, ranging from the classification of organisms to the file system on a computer. Characterizing the typical…

Physics and Society · Physics 2016-11-15 Guido D'Amico , Raul Rabadan , Matthew Kleban

While clustering is one of the most popular methods for data mining, analysts lack adequate tools for quick, iterative clustering analysis, which is essential for hypothesis generation and data reasoning. We introduce Clustrophile, an…

Human-Computer Interaction · Computer Science 2017-10-09 Çağatay Demiralp

In this paper, we study Dehn colorings of spatial graph diagrams, and classify the vertex conditions, equivalently the palettes. We give some example of spatial graphs which can be distinguished by the number of Dehn colorings with…

Geometric Topology · Mathematics 2021-08-04 Kanako Oshiro , Natsumi Oyamaguchi