Related papers: Approximating the Median under the Ulam Metric
We consider the approximate pattern matching problem under the edit distance. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to find the starting positions of all substrings of $T$ that can be…
In the $k$-Edit Circular Pattern Matching ($k$-Edit CPM) problem, we are given a length-$n$ text $T$, a length-$m$ pattern $P$, and a positive integer threshold $k$, and we are to report all starting positions of the substrings of $T$ that…
The edit distance between two strings is defined as the smallest number of insertions, deletions, and substitutions that need to be made to transform one of the strings to another one. Approximating edit distance in subquadratic time is…
For the constrained 2-means problem, we present a $O\left(dn+d({1\over\epsilon})^{O({1\over \epsilon})}\log n\right)$ time algorithm. It generates a collection $U$ of approximate center pairs $(c_1, c_2)$ such that one of pairs in $U$ can…
Permutation codes in the Ulam metric, which can correct multiple deletions, have been investigated extensively recently. In this work, we are interested in the maximum size of permutation codes in the Ulam metric and aim to design…
In the standard trace reconstruction problem, the goal is to \emph{exactly} reconstruct an unknown source string $\mathsf{x} \in \{0,1\}^n$ from independent "traces", which are copies of $\mathsf{x}$ that have been corrupted by a…
Consider the problem of estimating the median of N items to a precision epsilon, i.e., the estimate should be such that, with a high probability, the number of items, with values both smaller than and larger than this estimate, is less than…
Given two strings of length $n$ over alphabet $\Sigma$, and an upper bound $k$ on their edit distance, the algorithm of Myers (Algorithmica'86) and Landau and Vishkin (JCSS'88) computes the unweighted string edit distance in…
The rank aggregation problem seeks to combine multiple rank orderings of the same set of candidates into a single consensus ordering. Such problems arise in diverse domains, including web search, employment, college admissions, and voting.…
The edit distance between strings classically assigns unit cost to every character insertion, deletion, and substitution, whereas the Hamming distance only allows substitutions. In many real-life scenarios, insertions and deletions…
We consider a robust variant of the classical $k$-median problem, introduced by Anthony et al. \cite{AnthonyGGN10}. In the \emph{Robust $k$-Median problem}, we are given an $n$-vertex metric space $(V,d)$ and $m$ client sets $\set{S_i…
We introduce a novel definition of approximate palindromes in strings, and provide an algorithm to find all maximal approximate palindromes in a string with up to $k$ errors. Our definition is based on the usual edit operations of…
The well-known Eulerian path problem can be solved in polynomial time (more exactly, there exists a linear time algorithm for this problem). In this paper, we model the problem using a string matching framework, and then initiate an…
Approximate Pattern Matching is among the most fundamental string-processing tasks. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to identify the fragments of $T$ that are at distance at most…
A classic problem in unsupervised learning and data analysis is to find simpler and easy-to-visualize representations of the data that preserve its essential properties. A widely-used method to preserve the underlying hierarchical structure…
We study variants of the mean problem under the $p$-Dynamic Time Warping ($p$-DTW) distance, a popular and robust distance measure for sequential data. In our setting we are given a set of finite point sequences over an arbitrary metric…
In the Maximum Duo-Preservation String Mapping problem we are given two strings and wish to map the letters of the former to the letters of the latter so as to maximise the number of duos. A duo is a pair of consecutive letters that is…
Motivated by data analysis and machine learning applications, we consider the popular high-dimensional Euclidean $k$-median and $k$-means problems. We propose a new primal-dual algorithm, inspired by the classic algorithm of Jain and…
Let $(\{1,2,\ldots,n\},d)$ be a metric space. We analyze the expected value and the variance of $\sum_{i=1}^{\lfloor n/2\rfloor}\,d({\boldsymbol{\pi}}(2i-1),{\boldsymbol{\pi}}(2i))$ for a uniformly random permutation ${\boldsymbol{\pi}}$ of…
We study the classic Text-to-Pattern Hamming Distances problem: given a pattern $P$ of length $m$ and a text $T$ of length $n$, both over a polynomial-size alphabet, compute the Hamming distance between $P$ and $T[i\, .\, . \, i+m-1]$ for…