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Related papers: nnU-Net for Brain Tumor Segmentation

200 papers

Purpose: The segmentation of brain tumors is one of the most active areas of medical image analysis. While current methods perform superhuman on benchmark data sets, their applicability in daily clinical practice has not been evaluated. In…

Image and Video Processing · Electrical Eng. & Systems 2020-12-17 Sabine Müller , Joachim Weickert , Norbert Graf

Automatic brain tumor segmentation from Magnetic Resonance Imaging (MRI) data plays an important role in assessing tumor response to therapy and personalized treatment stratification.Manual segmentation is tedious and…

Image and Video Processing · Electrical Eng. & Systems 2021-11-29 Hadas Ben-Atya , Ori Rajchert , Liran Goshen , Moti Freiman

The current study investigated the use of Explainable Artificial Intelligence (XAI) to improve the accuracy of brain tumor segmentation in MRI images, with the goal of assisting physicians in clinical decision-making. The study focused on…

Computer Vision and Pattern Recognition · Computer Science 2025-10-10 Ming Jie Ong , Sze Yinn Ung , Sim Kuan Goh , Jimmy Y. Zhong

Pediatric central nervous system tumors are the leading cause of cancer-related deaths in children. The five-year survival rate for high-grade glioma in children is less than 20%. The development of new treatments is dependent upon…

Image and Video Processing · Electrical Eng. & Systems 2025-07-01 Anahita Fathi Kazerooni , Nastaran Khalili , Xinyang Liu , Debanjan Haldar , Zhifan Jiang , Anna Zapaishchykova , Julija Pavaine , Lubdha M. Shah , Blaise V. Jones , Nakul Sheth , Sanjay P. Prabhu , Aaron S. McAllister , Wenxin Tu , Khanak K. Nandolia , Andres F. Rodriguez , Ibraheem Salman Shaikh , Mariana Sanchez Montano , Hollie Anne Lai , Maruf Adewole , Jake Albrecht , Udunna Anazodo , Hannah Anderson , Syed Muhammed Anwar , Alejandro Aristizabal , Sina Bagheri , Ujjwal Baid , Timothy Bergquist , Austin J. Borja , Evan Calabrese , Verena Chung , Gian-Marco Conte , James Eddy , Ivan Ezhov , Ariana M. Familiar , Keyvan Farahani , Deep Gandhi , Anurag Gottipati , Shuvanjan Haldar , Juan Eugenio Iglesias , Anastasia Janas , Elaine Elaine , Alexandros Karargyris , Hasan Kassem , Neda Khalili , Florian Kofler , Dominic LaBella , Koen Van Leemput , Hongwei B. Li , Nazanin Maleki , Zeke Meier , Bjoern Menze , Ahmed W. Moawad , Sarthak Pati , Marie Piraud , Tina Poussaint , Zachary J. Reitman , Jeffrey D. Rudie , Rachit Saluja , MIcah Sheller , Russell Takeshi Shinohara , Karthik Viswanathan , Chunhao Wang , Benedikt Wiestler , Walter F. Wiggins , Christos Davatzikos , Phillip B. Storm , Miriam Bornhorst , Roger Packer , Trent Hummel , Peter de Blank , Lindsey Hoffman , Mariam Aboian , Ali Nabavizadeh , Jeffrey B. Ware , Benjamin H. Kann , Brian Rood , Adam Resnick , Spyridon Bakas , Arastoo Vossough , Marius George Linguraru

Brain tumors in magnetic resonance imaging (MR) are difficult, time-consuming, and prone to human error. These challenges can be resolved by developing automatic brain tumor segmentation methods from MR images. Various deep-learning models…

Image and Video Processing · Electrical Eng. & Systems 2024-08-23 Subin Sahayam , John Michael Sujay Zakkam , Yoga Sri Varshan , Umarani Jayaraman

A brain tumor, whether benign or malignant, can potentially be life threatening and requires painstaking efforts in order to identify the type, origin and location, let alone cure one. Manual segmentation by medical specialists can be…

Image and Video Processing · Electrical Eng. & Systems 2023-05-02 Ayan Gupta , Mayank Dixit , Vipul Kumar Mishra , Attulya Singh , Atul Dayal

Automated segmentation of Pancreatic Ductal Adenocarcinoma (PDAC) from MRI is critical for clinical workflows but is hindered by poor tumor-tissue contrast and a scarcity of annotated data. This paper details our submission to the PANTHER…

Computer Vision and Pattern Recognition · Computer Science 2025-09-01 Omer Faruk Durugol , Maximilian Rokuss , Yannick Kirchhoff , Klaus H. Maier-Hein

The U-Net is arguably the most successful segmentation architecture in the medical domain. Here we apply a 3D U-Net to the 2019 Kidney and Kidney Tumor Segmentation Challenge and attempt to improve upon it by augmenting it with residual and…

Image and Video Processing · Electrical Eng. & Systems 2019-10-07 Fabian Isensee , Klaus H. Maier-Hein

Brain tumors pose a serious health threat due to their rapid growth and potential for metastasis. While medical imaging has advanced significantly, accurately identifying and characterizing these tumors remains a challenge. This study…

Image and Video Processing · Electrical Eng. & Systems 2024-11-05 Mahin Mohammadi , Saman Jamshidi

Machine learning has been widely adopted for medical image analysis in recent years given its promising performance in image segmentation and classification tasks. As a data-driven science, the success of machine learning, in particular…

Computer Vision and Pattern Recognition · Computer Science 2020-07-06 Chengliang Dai , Shuo Wang , Yuanhan Mo , Kaichen Zhou , Elsa Angelini , Yike Guo , Wenjia Bai

Automatic brain tumor segmentation plays an important role for diagnosis, surgical planning and treatment assessment of brain tumors. Deep convolutional neural networks (CNNs) have been widely used for this task. Due to the relatively small…

Computer Vision and Pattern Recognition · Computer Science 2019-02-26 Guotai Wang , Wenqi Li , Sebastien Ourselin , Tom Vercauteren

U-Net has achieved huge success in various medical image segmentation challenges. Kinds of new architectures with bells and whistles might succeed in certain dataset when employed with optimal hyper-parameter, but their generalization…

Image and Video Processing · Electrical Eng. & Systems 2019-08-14 Wenshuai Zhao , Zengfeng Zeng

The work presented in this paper is to propose a reliable high-quality system of Convolutional Neural Network (CNN) for brain tumor segmentation with a low computation requirement. The system consists of a CNN for the main processing for…

Image and Video Processing · Electrical Eng. & Systems 2023-08-15 Yanming Sun , Chunyan Wang

Brain tumor segmentation plays a pivotal role in medical image processing. In this work, we aim to segment brain MRI volumes. 3D convolution neural networks (CNN) such as 3D U-Net and V-Net employing 3D convolutions to capture the…

Computer Vision and Pattern Recognition · Computer Science 2019-09-24 Chen Chen , Xiaopeng Liu , Meng Ding , Junfeng Zheng , Jiangyun Li

Radiation therapy (RT) is essential in treating head and neck cancer (HNC), with magnetic resonance imaging(MRI)-guided RT offering superior soft tissue contrast and functional imaging. However, manual tumor segmentation is time-consuming…

Image and Video Processing · Electrical Eng. & Systems 2024-11-25 Nikoo Moradi , André Ferreira , Behrus Puladi , Jens Kleesiek , Emad Fatemizadeh , Gijs Luijten , Victor Alves , Jan Egger

In this study, an automated three dimensional (3D) deep segmentation approach for detecting gliomas in 3D pre-operative MRI scans is proposed. Then, a classi-fication algorithm based on random forests, for survival prediction is presented.…

Image and Video Processing · Electrical Eng. & Systems 2019-11-20 Mehdi Amian , Mohammadreza Soltaninejad

In this paper we propose a 2D deep residual Unet with 104 convolutional layers (DR-Unet104) for lesion segmentation in brain MRIs. We make multiple additions to the Unet architecture, including adding the 'bottleneck' residual block to the…

Image and Video Processing · Electrical Eng. & Systems 2021-05-05 Jordan Colman , Lei Zhang , Wenting Duan , Xujiong Ye

Glioblastoma is a highly aggressive and malignant brain tumor type that requires early diagnosis and prompt intervention. Due to its heterogeneity in appearance, developing automated detection approaches is challenging. To address this…

Image and Video Processing · Electrical Eng. & Systems 2024-12-31 Ziya Ata Yazıcı , İlkay Öksüz , Hazım Kemal Ekenel

Brain tumor segmentation is essential for diagnosis and treatment planning, yet many CNN and U-Net based approaches produce noisy boundaries in regions of tumor infiltration. We introduce UAMSA-UNet, an Uncertainty-Aware Multi-Scale…

Computer Vision and Pattern Recognition · Computer Science 2026-01-15 Satyaki Roy Chowdhury , Golrokh Mirzaei

In this paper, we present a fully automatic brain tumor segmentation method based on Deep Neural Networks (DNNs). The proposed networks are tailored to glioblastomas (both low and high grade) pictured in MR images. By their very nature,…

Computer Vision and Pattern Recognition · Computer Science 2016-05-23 Mohammad Havaei , Axel Davy , David Warde-Farley , Antoine Biard , Aaron Courville , Yoshua Bengio , Chris Pal , Pierre-Marc Jodoin , Hugo Larochelle