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Related papers: nnU-Net for Brain Tumor Segmentation

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Medical image segmentation, particularly for brain tumor analysis, demands precise and computationally efficient models due to the complexity of multimodal MRI datasets and diverse tumor morphologies. This study introduces PSO-UNet, which…

Image and Video Processing · Electrical Eng. & Systems 2025-11-25 Shoffan Saifullah , Rafał Dreżewski

Introduction: The present study on the development and evaluation of an automated brain tumor segmentation technique based on deep learning using the 3D U-Net model. Objectives: The objective is to leverage state-of-the-art convolutional…

Image and Video Processing · Electrical Eng. & Systems 2024-04-10 Suman Sourabh , Murugappan Valliappan , Narayana Darapaneni , Anwesh R P

Most of the current state-of-the-art methods for tumor segmentation are based on machine learning models trained on manually segmented images. This type of training data is particularly costly, as manual delineation of tumors is not only…

Computer Vision and Pattern Recognition · Computer Science 2019-08-21 Pawel Mlynarski , Hervé Delingette , Antonio Criminisi , Nicholas Ayache

The translation of AI-generated brain metastases (BM) segmentation into clinical practice relies heavily on diverse, high-quality annotated medical imaging datasets. The BraTS-METS 2023 challenge has gained momentum for testing and…

Other Quantitative Biology · Quantitative Biology 2024-12-10 Ahmed W. Moawad , Anastasia Janas , Ujjwal Baid , Divya Ramakrishnan , Rachit Saluja , Nader Ashraf , Nazanin Maleki , Leon Jekel , Nikolay Yordanov , Pascal Fehringer , Athanasios Gkampenis , Raisa Amiruddin , Amirreza Manteghinejad , Maruf Adewole , Jake Albrecht , Udunna Anazodo , Sanjay Aneja , Syed Muhammad Anwar , Timothy Bergquist , Veronica Chiang , Verena Chung , Gian Marco Conte , Farouk Dako , James Eddy , Ivan Ezhov , Nastaran Khalili , Keyvan Farahani , Juan Eugenio Iglesias , Zhifan Jiang , Elaine Johanson , Anahita Fathi Kazerooni , Florian Kofler , Kiril Krantchev , Dominic LaBella , Koen Van Leemput , Hongwei Bran Li , Marius George Linguraru , Xinyang Liu , Zeke Meier , Bjoern H Menze , Harrison Moy , Klara Osenberg , Marie Piraud , Zachary Reitman , Russell Takeshi Shinohara , Chunhao Wang , Benedikt Wiestler , Walter Wiggins , Umber Shafique , Klara Willms , Arman Avesta , Khaled Bousabarah , Satrajit Chakrabarty , Nicolo Gennaro , Wolfgang Holler , Manpreet Kaur , Pamela LaMontagne , MingDe Lin , Jan Lost , Daniel S. Marcus , Ryan Maresca , Sarah Merkaj , Gabriel Cassinelli Pedersen , Marc von Reppert , Aristeidis Sotiras , Oleg Teytelboym , Niklas Tillmans , Malte Westerhoff , Ayda Youssef , Devon Godfrey , Scott Floyd , Andreas Rauschecker , Javier Villanueva-Meyer , Irada Pfluger , Jaeyoung Cho , Martin Bendszus , Gianluca Brugnara , Justin Cramer , Gloria J. Guzman Perez-Carillo , Derek R. Johnson , Anthony Kam , Benjamin Yin Ming Kwan , Lillian Lai , Neil U. Lall , Fatima Memon , Mark Krycia , Satya Narayana Patro , Bojan Petrovic , Tiffany Y. So , Gerard Thompson , Lei Wu , E. Brooke Schrickel , Anu Bansal , Frederik Barkhof , Cristina Besada , Sammy Chu , Jason Druzgal , Alexandru Dusoi , Luciano Farage , Fabricio Feltrin , Amy Fong , Steve H. Fung , R. Ian Gray , Ichiro Ikuta , Michael Iv , Alida A. Postma , Amit Mahajan , David Joyner , Chase Krumpelman , Laurent Letourneau-Guillon , Christie M. Lincoln , Mate E. Maros , Elka Miller , Fanny Moron , Esther A. Nimchinsky , Ozkan Ozsarlak , Uresh Patel , Saurabh Rohatgi , Atin Saha , Anousheh Sayah , Eric D. Schwartz , Robert Shih , Mark S. Shiroishi , Juan E. Small , Manoj Tanwar , Jewels Valerie , Brent D. Weinberg , Matthew L. White , Robert Young , Vahe M. Zohrabian , Aynur Azizova , Melanie Maria Theresa Bruseler , Mohanad Ghonim , Mohamed Ghonim , Abdullah Okar , Luca Pasquini , Yasaman Sharifi , Gagandeep Singh , Nico Sollmann , Theodora Soumala , Mahsa Taherzadeh , Philipp Vollmuth , Martha Foltyn-Dumitru , Ajay Malhotra , Aly H. Abayazeed , Francesco Dellepiane , Philipp Lohmann , Victor M. Perez-Garcia , Hesham Elhalawani , Maria Correia de Verdier , Sanaria Al-Rubaiey , Rui Duarte Armindo , Kholod Ashraf , Moamen M. Asla , Mohamed Badawy , Jeroen Bisschop , Nima Broomand Lomer , Jan Bukatz , Jim Chen , Petra Cimflova , Felix Corr , Alexis Crawley , Lisa Deptula , Tasneem Elakhdar , Islam H. Shawali , Shahriar Faghani , Alexandra Frick , Vaibhav Gulati , Muhammad Ammar Haider , Fatima Hierro , Rasmus Holmboe Dahl , Sarah Maria Jacobs , Kuang-chun Jim Hsieh , Sedat G. Kandemirli , Katharina Kersting , Laura Kida , Sofia Kollia , Ioannis Koukoulithras , Xiao Li , Ahmed Abouelatta , Aya Mansour , Ruxandra-Catrinel Maria-Zamfirescu , Marcela Marsiglia , Yohana Sarahi Mateo-Camacho , Mark McArthur , Olivia McDonnell , Maire McHugh , Mana Moassefi , Samah Mostafa Morsi , Alexander Munteanu , Khanak K. Nandolia , Syed Raza Naqvi , Yalda Nikanpour , Mostafa Alnoury , Abdullah Mohamed Aly Nouh , Francesca Pappafava , Markand D. Patel , Samantha Petrucci , Eric Rawie , Scott Raymond , Borna Roohani , Sadeq Sabouhi , Laura M. Sanchez-Garcia , Zoe Shaked , Pokhraj P. Suthar , Talissa Altes , Edvin Isufi , Yaseen Dhemesh , Jaime Gass , Jonathan Thacker , Abdul Rahman Tarabishy , Benjamin Turner , Sebastiano Vacca , George K. Vilanilam , Daniel Warren , David Weiss , Fikadu Worede , Sara Yousry , Wondwossen Lerebo , Alejandro Aristizabal , Alexandros Karargyris , Hasan Kassem , Sarthak Pati , Micah Sheller , Katherine E. Link , Evan Calabrese , Nourel hoda Tahon , Ayman Nada , Yuri S. Velichko , Spyridon Bakas , Jeffrey D. Rudie , Mariam Aboian

This paper proposes a 3D attention-based U-Net architecture for multi-region segmentation of brain tumors using a single stacked multi-modal volume created by combining three non-native MRI volumes. The attention mechanism added to the…

Image and Video Processing · Electrical Eng. & Systems 2023-05-11 Maryann M. Gitonga

We propose a reliable and energy-efficient framework for 3D brain tumor segmentation using spiking neural networks (SNNs). A multi-view ensemble of sagittal, coronal, and axial SNN models provides voxel-wise uncertainty estimation and…

Computer Vision and Pattern Recognition · Computer Science 2026-01-26 Aurora Pia Ghiardelli , Guangzhi Tang , Tao Sun

Glioblastomas are the most aggressive fast-growing primary brain cancer which originate in the glial cells of the brain. Accurate identification of the malignant brain tumor and its sub-regions is still one of the most challenging problems…

Computer Vision and Pattern Recognition · Computer Science 2021-12-28 Ramy A. Zeineldin , Mohamed E. Karar , Franziska Mathis-Ullrich , Oliver Burgert

Brain tumors remain a critical global health challenge, necessitating advancements in diagnostic techniques and treatment methodologies. A tumor or its recurrence often needs to be identified in imaging studies and differentiated from…

Image and Video Processing · Electrical Eng. & Systems 2024-03-18 Shashidhar Reddy Javaji , Sovesh Mohapatra , Advait Gosai , Gottfried Schlaug

Multimodal brain tumor segmentation challenge (BraTS) brings together researchers to improve automated methods for 3D MRI brain tumor segmentation. Tumor segmentation is one of the fundamental vision tasks necessary for diagnosis and…

Image and Video Processing · Electrical Eng. & Systems 2020-01-08 Andriy Myronenko , Ali Hatamizadeh

The BraTS 2021 challenge celebrates its 10th anniversary and is jointly organized by the Radiological Society of North America (RSNA), the American Society of Neuroradiology (ASNR), and the Medical Image Computing and Computer Assisted…

Computer Vision and Pattern Recognition · Computer Science 2021-09-14 Ujjwal Baid , Satyam Ghodasara , Suyash Mohan , Michel Bilello , Evan Calabrese , Errol Colak , Keyvan Farahani , Jayashree Kalpathy-Cramer , Felipe C. Kitamura , Sarthak Pati , Luciano M. Prevedello , Jeffrey D. Rudie , Chiharu Sako , Russell T. Shinohara , Timothy Bergquist , Rong Chai , James Eddy , Julia Elliott , Walter Reade , Thomas Schaffter , Thomas Yu , Jiaxin Zheng , Ahmed W. Moawad , Luiz Otavio Coelho , Olivia McDonnell , Elka Miller , Fanny E. Moron , Mark C. Oswood , Robert Y. Shih , Loizos Siakallis , Yulia Bronstein , James R. Mason , Anthony F. Miller , Gagandeep Choudhary , Aanchal Agarwal , Cristina H. Besada , Jamal J. Derakhshan , Mariana C. Diogo , Daniel D. Do-Dai , Luciano Farage , John L. Go , Mohiuddin Hadi , Virginia B. Hill , Michael Iv , David Joyner , Christie Lincoln , Eyal Lotan , Asako Miyakoshi , Mariana Sanchez-Montano , Jaya Nath , Xuan V. Nguyen , Manal Nicolas-Jilwan , Johanna Ortiz Jimenez , Kerem Ozturk , Bojan D. Petrovic , Chintan Shah , Lubdha M. Shah , Manas Sharma , Onur Simsek , Achint K. Singh , Salil Soman , Volodymyr Statsevych , Brent D. Weinberg , Robert J. Young , Ichiro Ikuta , Amit K. Agarwal , Sword C. Cambron , Richard Silbergleit , Alexandru Dusoi , Alida A. Postma , Laurent Letourneau-Guillon , Gloria J. Guzman Perez-Carrillo , Atin Saha , Neetu Soni , Greg Zaharchuk , Vahe M. Zohrabian , Yingming Chen , Milos M. Cekic , Akm Rahman , Juan E. Small , Varun Sethi , Christos Davatzikos , John Mongan , Christopher Hess , Soonmee Cha , Javier Villanueva-Meyer , John B. Freymann , Justin S. Kirby , Benedikt Wiestler , Priscila Crivellaro , Rivka R. Colen , Aikaterini Kotrotsou , Daniel Marcus , Mikhail Milchenko , Arash Nazeri , Hassan Fathallah-Shaykh , Roland Wiest , Andras Jakab , Marc-Andre Weber , Abhishek Mahajan , Bjoern Menze , Adam E. Flanders , Spyridon Bakas

Automated segmentation of distinct tumor regions is critical for accurate diagnosis and treatment planning in pediatric brain tumors. This study evaluates the efficacy of the Multi-Planner U-Net (MPUnet) approach in segmenting different…

Image and Video Processing · Electrical Eng. & Systems 2024-01-15 Sumit Pandey , Satyasaran Changdar , Mathias Perslev , Erik B Dam

Accurate segmentation of brain tumors in MRI scans is critical for clinical diagnosis and treatment planning. We propose a semi-supervised, two-stage framework that extends the ReCoSeg approach to the larger and more heterogeneous BraTS…

Image and Video Processing · Electrical Eng. & Systems 2025-08-05 Sara Yavari , Rahul Nitin Pandya , Jacob Furst

Identifying key pathological features in brain MRIs is crucial for the long-term survival of glioma patients. However, manual segmentation is time-consuming, requiring expert intervention and is susceptible to human error. Therefore,…

Early-stage 3D brain tumor segmentation from magnetic resonance imaging (MRI) scans is crucial for prompt and effective treatment. However, this process faces the challenge of precise delineation due to the tumors' complex heterogeneity.…

Image and Video Processing · Electrical Eng. & Systems 2024-11-26 Ebtihal J. Alwadee , Xianfang Sun , Yipeng Qin , Frank C. Langbein

Manual delineation of tumor regions from magnetic resonance (MR) images is time-consuming, requires an expert, and is prone to human error. In recent years, deep learning models have been the go-to approach for the segmentation of brain…

Image and Video Processing · Electrical Eng. & Systems 2024-01-03 Subin Sahayam , Umarani Jayaraman

This article presents a multiscale patch based convolutional neural network for the automatic segmentation of brain tumors in multi-modality 3D MR images. We use multiscale deep supervision and inputs to train a convolutional network. We…

Computer Vision and Pattern Recognition · Computer Science 2017-10-09 Jean Stawiaski

Accurate segmentation of brain tumors from 3D multimodal MRI is vital for diagnosis and treatment planning across diverse brain tumors. This paper addresses the challenges posed by the BraTS 2023, presenting a unified transfer learning…

Image and Video Processing · Electrical Eng. & Systems 2024-12-12 Ramy A. Zeineldin , Franziska Mathis-Ullrich

Robust segmentation across both pre-treatment and post-treatment glioma scans can be helpful for consistent tumor monitoring and treatment planning. BraTS 2025 Task 1 addresses this by challenging models to generalize across varying tumor…

Computer Vision and Pattern Recognition · Computer Science 2025-09-30 Ishika Jain , Siri Willems , Steven Latre , Tom De Schepper

The paper demonstrates the use of the fully convolutional neural network for glioma segmentation on the BraTS 2019 dataset. Three-layers deep encoder-decoder architecture is used along with dense connection at encoder part to propagate the…

Image and Video Processing · Electrical Eng. & Systems 2019-09-23 Rupal Agravat , Mehul S Raval

Recently deep learning has been playing a major role in the field of computer vision. One of its applications is the reduction of human judgment in the diagnosis of diseases. Especially, brain tumor diagnosis requires high accuracy, where…

Computer Vision and Pattern Recognition · Computer Science 2018-09-24 Zahra Sobhaninia , Safiyeh Rezaei , Alireza Noroozi , Mehdi Ahmadi , Hamidreza Zarrabi , Nader Karimi , Ali Emami , Shadrokh Samavi
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