Related papers: Shotgun Assembly of Erdos-Renyi Random Graphs
In a recent work, Huang and Tikhomirov considered the shotgun assembly for Erd\H os-R\'enyi graphs $\mathcal G(n,p_n)$ with $p_n=n^{-\alpha}$, and showed that the graph is reconstructable if $0<\alpha < \frac{1}{2}$ and not reconstructable…
In a recent paper [6], J. Gaudio and E. Mossel studied the shotgun assembly of the Erd\H{o}s-R\'enyi graph $\mathcal G(n,p_n)$ with $p_n=n^{-\alpha}$, and showed that the graph is reconstructable form its $1$-neighbourhoods if $0<\alpha <…
We consider the problem of reconstructing graphs or labeled graphs from neighborhoods of a given radius r. Special instances of this problem include the well known: DNA shotgun assembly; the lesser-known: neural network reconstruction; and…
Mossel and Ross (2019) introduce the shotgun assembly problem for random graphs: what radius $R$ ensures that the random graph $G$ can be uniquely recovered from its list of rooted $R$-neighborhoods, with high probability? Here we consider…
In the graph shotgun assembly problem, we are given the balls of radius $r$ around each vertex of a graph and asked to reconstruct the graph. We study the shotgun assembly of the Erd\H{o}s-R\'enyi random graph $\mathcal G(n,p)$ for a wide…
In the shotgun assembly problem for a graph, we are given the empirical profile for rooted neighborhoods of depth $r$ (up to isomorphism) for some $r\geq 1$ and we wish to recover the underlying graph up to isomorphism. When the underlying…
Given a positive integer $n$, an unlabeled graph $G$ on $n$ vertices, and a vertex $v$ of $G$, let $N_G(v)$ be the subgraph of $G$ induced by vertices of $G$ of distance at most one from $v$. We show that there are universal constants…
Embedding graphs in a geographical or latent space, i.e.\ inferring locations for vertices in Euclidean space or on a smooth manifold or submanifold, is a common task in network analysis, statistical inference, and graph visualization. We…
We present a framework for the design of optimal assembly algorithms for shotgun sequencing under the criterion of complete reconstruction. We derive a lower bound on the read length and the coverage depth required for reconstruction in…
A reassembling of a simple graph G = (V,E) is an abstraction of a problem arising in earlier studies of network analysis. There are several equivalent definitions of graph reassembling; in this report we use a definition which makes it…
A random algebraic graph is defined by a group $G$ with a uniform distribution over it and a connection $\sigma:G\longrightarrow[0,1]$ with expectation $p,$ satisfying $\sigma(g)=\sigma(g^{-1}).$ The random graph…
Graphlets are subgraphs rooted at a fixed vertex. The number of occurrences of graphlets aligned to a particular vertex, called graphlet degree sequence (gds), gives a topological description of the surrounding of the analyzed vertex.…
Let $G$ be a $3$-connected ordered graph with $n$ vertices and $m$ edges. Let $\mathbf{p}$ be a randomly chosen mapping of these $n$ vertices to the integer range $\{1, 2,3, \ldots, 2^b\}$ for $b\ge m^2$. Let $\ell$ be the vector of $m$…
Let $G$ be a group of permutations acting on an $n$-vertex set $V$, and $X$ and $Y$ be two simple graphs on $V$. We say that $X$ and $Y$ are $G$-isomorphic if $Y$ belongs to the orbit of $X$ under the action of $G$. One can naturally…
Consider a collection of random variables attached to the vertices of a graph. The reconstruction problem requires to estimate one of them given `far away' observations. Several theoretical results (and simple algorithms) are available when…
In a recent work, Mossel and Ross considered the shotgun assembly problem for a random jigsaw puzzle. Their model consists of a puzzle - an $n\times n$ grid, where each vertex is viewed as a center of a piece. They assume that each of the…
Random geometric graphs are random graph models defined on metric spaces. Such a model is defined by first sampling points from a metric space and then connecting each pair of sampled points with probability that depends on their distance,…
We consider the problem of reconstructing an undirected graph $G$ on $n$ vertices given multiple random noisy subgraphs or "traces". Specifically, a trace is generated by sampling each vertex with probability $p_v$, then taking the…
The reassembling of a simple connected graph G = (V,E) is an abstraction of a problem arising in earlier studies of network analysis. Its simplest formulation is in two steps: (1) We cut every edge of G into two halves, thus obtaining a…
In this paper, we study the problem of finding a collection of planted cycles in an \ER random graph $G \sim \mathcal{G}(n, \lambda/n)$, in analogy to the famous Planted Clique Problem. When the cycles are planted on a uniformly random…