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Revealing physical interactions in complex systems from observed collective dynamics constitutes a fundamental inverse problem in science. Current reconstruction methods require access to a system's model or dynamical data at a level of…

Physics and Society · Physics 2018-01-18 Mor Nitzan , Jose Casadiego , Marc Timme

There is an influx of heterogeneous information network (HIN) based recommender systems in recent years since HIN is capable of characterizing complex graphs and contains rich semantics. Although the existing approaches have achieved…

Information Retrieval · Computer Science 2020-07-02 Jiarui Jin , Jiarui Qin , Yuchen Fang , Kounianhua Du , Weinan Zhang , Yong Yu , Zheng Zhang , Alexander J. Smola

Despite the prevalence of community detection algorithms, relatively less work has been done on understanding whether a network is indeed modular and how resilient the community structure is under perturbations. To address this issue, we…

Physics and Society · Physics 2014-06-11 Tanmoy Chakraborty , Sriram Srinivasan , Niloy Ganguly , Animesh Mukherjee , Sanjukta Bhowmick

In this paper, I present a method to solve a node discovery problem in a networked organization. Covert nodes refer to the nodes which are not observable directly. They affect social interactions, but do not appear in the surveillance logs…

Artificial Intelligence · Computer Science 2016-11-15 Yoshiharu Maeno

Persistent homology is a tool from Topological Data Analysis (TDA) used to summarize the topology underlying data. It can be conveniently represented through persistence diagrams. Observing a noisy signal, common strategies to infer its…

Statistics Theory · Mathematics 2024-08-28 Hugo Henneuse

In recent years, networks with higher-order interactions have emerged as a powerful tool to model complex systems. Comparing these higher-order systems remains however a challenge. Traditional similarity measures designed for pairwise…

Physics and Society · Physics 2026-02-24 Cosimo Agostinelli , Marco Mancastroppa , Alain Barrat

Each complex network (or class of networks) presents specific topological features which characterize its connectivity and highly influence the dynamics of processes executed on the network. The analysis, discrimination, and synthesis of…

Disordered Systems and Neural Networks · Physics 2009-09-29 Luciano da F. Costa , Francisco A. Rodrigues , Gonzalo Travieso , P. R. Villas Boas

Persistent Homology (PH) is a useful tool to study the underlying structure of a data set. Persistence Diagrams (PDs), which are 2D multisets of points, are a concise summary of the information found by studying the PH of a data set.…

Computational Geometry · Computer Science 2020-11-24 Megan Johnson , Jae-Hun Jung

Objective: Modelling the associations from high-throughput experimental molecular data has provided unprecedented insights into biological pathways and signalling mechanisms. Graphical models and networks have especially proven to be useful…

Machine Learning · Statistics 2013-04-24 Marco Scutari , Radhakrishnan Nagarajan

Deep learning is a topic of considerable current interest. The availability of massive data collections and powerful software resources has led to an impressive amount of results in many application areas that reveal essential but hidden…

Machine Learning · Computer Science 2023-01-31 Gianluigi Pillonetto , Aleksandr Aravkin , Daniel Gedon , Lennart Ljung , Antônio H. Ribeiro , Thomas B. Schön

Motivated by the growing number of mobile devices capable of connecting and exchanging messages, we propose a methodology aiming to model and analyze node mobility in networks. We note that many existing solutions in the literature rely on…

Networking and Internet Architecture · Computer Science 2021-11-12 Matheus F. C. Barros , Carlos H. G. Ferreira , Bruno Pereira dos Santos , Lourenço A. P. Júnior , Marco Mellia , Jussara M. Almeida

Within the context of topological data analysis, the problems of identifying topological significance and matching signals across datasets are important and useful inferential tasks in many applications. The limitation of existing solutions…

Algebraic Topology · Mathematics 2024-06-26 Inés García-Redondo , Anthea Monod , Anna Song

This work examines the problem of topology inference over discrete-time nonlinear stochastic networked dynamical systems. The goal is to recover the underlying digraph linking the network agents, from observations of their state-evolution.…

Multiagent Systems · Computer Science 2019-06-24 Augusto Santos , Vincenzo Matta , Ali H. Sayed

Identifying interactions between proteins is important to understand underlying biological processes. Extracting a protein-protein interaction (PPI) from the raw text is often very difficult. Previous supervised learning methods have used…

Quantitative Methods · Quantitative Biology 2018-08-10 Mahtab Ahmed , Jumayel Islam , Muhammad Rifayat Samee , Robert E. Mercer

This paper proposes a novel topological learning framework that integrates networks of different sizes and topology through persistent homology. Such challenging task is made possible through the introduction of a computationally efficient…

Neurons and Cognition · Quantitative Biology 2023-01-30 Tananun Songdechakraiwut , Moo K. Chung

Detecting meaningful structure in neural activity and connectivity data is challenging in the presence of hidden nonlinearities, where traditional eigenvalue-based methods may be misleading. We introduce a novel approach to matrix analysis,…

Neurons and Cognition · Quantitative Biology 2015-11-24 Chad Giusti , Eva Pastalkova , Carina Curto , Vladimir Itskov

A community within a network is a group of vertices densely connected to each other but less connected to the vertices outside. The problem of detecting communities in large networks plays a key role in a wide range of research areas, e.g.…

Social and Information Networks · Computer Science 2013-03-08 Pasquale De Meo , Emilio Ferrara , Giacomo Fiumara , Alessandro Provetti

We propose a new method for assessing agents influence in network structures, which takes into consideration nodes attributes, individual and group influences of nodes, and the intensity of interactions. This approach helps us to identify…

Social and Information Networks · Computer Science 2016-10-20 F. Aleskerov , N. Meshcheryakova , S. Shvydun

In many networks, vertices have hidden attributes, or types, that are correlated with the networks topology. If the topology is known but these attributes are not, and if learning the attributes is costly, we need a method for choosing…

Machine Learning · Statistics 2010-05-25 Xiaoran Yan , Yaojia Zhu , Jean-Baptiste Rouquier , Cristopher Moore

Community detection algorithms are fundamental tools to understand organizational principles in social networks. With the increasing power of social media platforms, when detecting communities there are two possi- ble sources of information…

Social and Information Networks · Computer Science 2016-04-14 Yuan Li
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