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We consider the problem of detecting a small subset of defective items from a large set via non-adaptive "random pooling" group tests. We consider both the case when the measurements are noiseless, and the case when the measurements are…

Information Theory · Computer Science 2011-07-25 Chun Lam Chan , Pak Hou Che , Sidharth Jaggi , Venkatesh Saligrama

In nonadaptive group testing, the main research objective is to design an efficient algorithm to identify a set of up to $t$ positive elements among $n$ samples with as few tests as possible. Disjunct matrices and separable matrices are two…

Combinatorics · Mathematics 2021-10-15 Bingchen Qian , Xin Wang , Gennian Ge

We consider a zero-error probabilistic group testing problem where individuals are defective independently but not with identical probabilities. We propose a greedy set formation method to build sets of individuals to be tested together. We…

Information Theory · Computer Science 2021-08-30 Mustafa Doger , Sennur Ulukus

In the group testing problem, the goal is to identify a subset of defective items within a larger set of items based on tests whose outcomes indicate whether any defective item is present. This problem is relevant in areas such as medical…

Information Theory · Computer Science 2022-09-28 Nelvin Tan , Way Tan , Jonathan Scarlett

This article reviews a class of adaptive group testing procedures that operate under a probabilistic model assumption as follows. Consider a set of $N$ items, where item $i$ has the probability $p$ ($p_i$ in the generalized group testing)…

Methodology · Statistics 2021-02-19 Yaakov Malinovsky , Paul S. Albert

In the group testing problem the aim is to identify a small set of $k\sim n^\theta$ infected individuals out of a population size $n$, $0<\theta<1$. We avail ourselves of a test procedure capable of testing groups of individuals, with the…

Discrete Mathematics · Computer Science 2021-05-14 Amin Coja-Oghlan , Oliver Gebhard , Max Hahn-Klimroth , Philipp Loick

Optimization by stochastic gradient descent is an important component of many large-scale machine learning algorithms. A wide variety of such optimization algorithms have been devised; however, it is unclear whether these algorithms are…

Machine Learning · Computer Science 2014-02-26 Tom Schaul , Ioannis Antonoglou , David Silver

The group testing problem consists of determining a small set of defective items from a larger set of items based on a number of possibly-noisy tests, and is relevant in applications such as medical testing, communication protocols, pattern…

Information Theory · Computer Science 2023-09-19 Jonathan Scarlett , Oliver Johnson

Non-adaptive group testing refers to the problem of inferring a sparse set of defectives from a larger population using the minimum number of simultaneous pooled tests. Recent positive results for noiseless group testing have motivated the…

Information Theory · Computer Science 2021-07-16 Gabriel Arpino , Nicolò Grometto , Afonso S. Bandeira

In this paper we study a new, generalized version of the well-known group testing problem. In the classical model of group testing we are given n objects, some of which are considered to be defective. We can test certain subsets of the…

Combinatorics · Mathematics 2012-04-09 Dániel Gerbner , Balázs Keszegh , Dömötör Pálvölgyi , Gábor Wiener

Among the challenges that the COVID-19 pandemic outbreak revealed is the problem to reduce the number of tests required for identifying the virus carriers in order to contain the viral spread while preserving the tests reliability. To cope…

Information Theory · Computer Science 2021-12-24 Catherine A. Haddad-Zaaknoon

We have a large number of samples and we want to find the infected ones using as few number of tests as possible. We can use group testing which tells about a small group of people whether at least one of them is infected. Group testing is…

Quantitative Methods · Quantitative Biology 2020-05-07 Endre Csóka

In this paper, we propose algorithms that leverage a known community structure to make group testing more efficient. We consider a population organized in connected communities: each individual participates in one or more communities, and…

Information Theory · Computer Science 2021-03-18 Pavlos Nikolopoulos , Sundara Rajan Srinivasavaradhan , Tao Guo , Christina Fragouli , Suhas Diggavi

Stochastic optimization algorithms update models with cheap per-iteration costs sequentially, which makes them amenable for large-scale data analysis. Such algorithms have been widely studied for structured sparse models where the sparsity…

Machine Learning · Computer Science 2019-05-10 Baojian Zhou , Feng Chen , Yiming Ying

Group testing is concerned with identifying $t$ defective items in a set of $m$ items, where each test reports whether a specific subset of items contains at least one defective. In non-adaptive group testing, the subsets to be tested are…

Computational Geometry · Computer Science 2020-12-03 Benjamin Aram Berendsohn , László Kozma

We introduce a novel probabilistic group testing framework, termed Poisson group testing, in which the number of defectives follows a right-truncated Poisson distribution. The Poisson model has a number of new applications, including…

Information Theory · Computer Science 2023-07-19 Amin Emad , Olgica Milenkovic

We consider the nonadaptive group testing with N items, of which $K = \Theta(N^\theta)$ are defective. We study a test design in which each item appears in nearly the same number of tests. For each item, we independently pick L tests…

Information Theory · Computer Science 2018-09-26 Oliver Johnson , Matthew Aldridge , Jonathan Scarlett

Identification of up to $d$ defective items and up to $h$ inhibitors in a set of $n$ items is the main task of non-adaptive group testing with inhibitors. To efficiently reduce the cost of this Herculean task, a subset of the $n$ items is…

Information Theory · Computer Science 2019-01-10 Thach V. Bui , Minoru Kuribayashi , Tetsuya Kojima , Isao Echizen

In group testing, simple binary-output tests are designed to identify a small number $t$ of defective items that are present in a large population of $N$ items. Each test takes as input a group of items and produces a binary output…

Information Theory · Computer Science 2017-04-11 Alexander Barg , Arya Mazumdar

The problem of finding the densest subgraph in a given graph has several applications in graph mining, particularly in areas like social network analysis, protein and gene analyses etc. Depending on the application, finding dense subgraphs…

Data Structures and Algorithms · Computer Science 2019-11-07 Naga V. C. Gudapati , Enrico Malaguti , Michele Monaci