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We consider the task of drawing a graph on multiple horizontal layers, where each node is assigned a layer, and each edge connects nodes of different layers. Known algorithms determine the orders of nodes on each layer to minimize crossings…

Data Structures and Algorithms · Computer Science 2025-03-03 Alexander Dobler , Jakob Roithinger

This paper proposes a metric to measure the dissimilarity between graphs that may have a different number of nodes. The proposed metric extends the generalised optimal subpattern assignment (GOSPA) metric, which is a metric for sets, to…

Social and Information Networks · Computer Science 2024-08-28 Jinhao Gu , Ángel F. García-Fernández , Robert E. Firth , Lennart Svensson

Graph kernel is a powerful tool measuring the similarity between graphs. Most of the existing graph kernels focused on node labels or attributes and ignored graph hierarchical structure information. In order to effectively utilize graph…

Machine Learning · Computer Science 2020-11-03 Kai Ma , Peng Wan , Daoqiang Zhang

We introduce probability-graphons which are probability kernels that generalize graphons to the case of weighted graphs. Probability-graphons appear as the limit objects to study sequences of large weighted graphs whose distribution of…

Discrete Mathematics · Computer Science 2025-06-12 Romain Abraham , Jean-François Delmas , Julien Weibel

Graphs are nowadays ubiquitous in the fields of signal processing and machine learning. As a tool used to express relationships between objects, graphs can be deployed to various ends: I) clustering of vertices, II) semi-supervised…

Machine Learning · Computer Science 2020-07-17 Carlos Lassance , Vincent Gripon , Gonzalo Mateos

This paper introduces some tools from graph theory and distributed consensus algorithms to construct an optimal, yet robust, hierarchical information sharing structure for large-scale decision making and control problems. The proposed…

Systems and Control · Computer Science 2012-08-16 Amir Noori

Link prediction, the problem of identifying missing links among a set of inter-related data entities, is a popular field of research due to its application to graph-like domains. Producing consistent evaluations of the performance of the…

Social and Information Networks · Computer Science 2016-11-28 Dario Garcia-Gasulla , Eduard Ayguadé , Jesús Labarta , Ulises Cortés

The PageRank is a widely used scoring function of networks in general and of the World Wide Web graph in particular. The PageRank is defined for directed graphs, but in some special cases applications for undirected graphs occur. In the…

Data Structures and Algorithms · Computer Science 2017-02-09 Vince Grolmusz

We prove two estimates for the expectation of the exponential of a complex function of a random permutation or subset. Using this theory, we find asymptotic expressions for the expected number of copies and induced copies of a given graph…

Combinatorics · Mathematics 2021-07-01 Catherine Greenhill , Mikhail Isaev , Brendan D. McKay

The pattern of zero entries in the inverse covariance matrix of a multivariate normal distribution corresponds to conditional independence restrictions between variables. Covariance selection aims at estimating those structural zeros from…

Statistics Theory · Mathematics 2016-08-16 Nicolai Meinshausen , Peter Bühlmann

Recent work has introduced sparse exchangeable graphs and the associated graphex framework, as a generalization of dense exchangeable graphs and the associated graphon framework. The development of this subject involves the interplay…

Probability · Mathematics 2020-02-12 Christian Borgs , Jennifer T. Chayes , Henry Cohn , Victor Veitch

Statistical graph models aim at modeling graphs as random realization among a set of possible graphs. One issue is to evaluate whether or not a graph is likely to have been generated by one particular model. In this paper we introduce the…

Social and Information Networks · Computer Science 2022-03-29 Louis Duvivier , Rémy Cazabet , Céline Robardet

Undirected graphs are often used to describe high dimensional distributions. Under sparsity conditions, the graph can be estimated using $\ell_1$ penalization methods. However, current methods assume that the data are independent and…

Machine Learning · Statistics 2008-04-29 Shuheng Zhou , John Lafferty , Larry Wasserman

We present a novel approach to tackle explainability of deep graph networks in the context of molecule property prediction tasks, named MEG (Molecular Explanation Generator). We generate informative counterfactual explanations for a…

Quantitative Methods · Quantitative Biology 2020-11-11 Danilo Numeroso , Davide Bacciu

Graphs are a powerful way to model interactions and relationships in data from a wide variety of application domains. In this setting, entities represented by vertices at the "center" of the graph are often more important than those…

Social and Information Networks · Computer Science 2014-11-06 Michael P. O'Brien , Blair D. Sullivan

Estimating the uncertainty in deep neural network predictions is crucial for many real-world applications. A common approach to model uncertainty is to choose a parametric distribution and fit the data to it using maximum likelihood…

Machine Learning · Computer Science 2022-11-28 Ali Harakeh , Jordan Hu , Naiqing Guan , Steven L. Waslander , Liam Paull

We propose a new graph-theoretic benchmark in this paper. The benchmark is developed to address shortcomings of an existing widely-used graph benchmark. We thoroughly studied a large number of traditional and contemporary graph algorithms…

Performance · Computer Science 2010-05-06 Andy B. Yoo , Yang Liu , Sheila Vaidya , Stephen Poole

The task of inferring the missing links in a graph based on its current structure is referred to as link prediction. Link prediction methods that are based on pairwise node similarity are well-established approaches in the literature. They…

Social and Information Networks · Computer Science 2020-08-21 Md Kamrul Islam , Sabeur Aridhi , Malika Smail-Tabbone

The objective of this paper is to study the characteristics (geometric and otherwise) of very large attribute based undirected networks. Real-world networks are often very large and fast evolving. Their analysis and understanding present a…

Applications · Statistics 2015-10-06 Koushiki Sarkar , Diganta Mukherjee

We analytically study proximity and distance properties of various kernels and similarity measures on graphs. This helps to understand the mathematical nature of such measures and can potentially be useful for recommending the adoption of…

Combinatorics · Mathematics 2018-08-17 Konstantin Avrachenkov , Pavel Chebotarev , Dmytro Rubanov