English

Explaining Deep Graph Networks with Molecular Counterfactuals

Quantitative Methods 2020-11-11 v1 Machine Learning

Abstract

We present a novel approach to tackle explainability of deep graph networks in the context of molecule property prediction tasks, named MEG (Molecular Explanation Generator). We generate informative counterfactual explanations for a specific prediction under the form of (valid) compounds with high structural similarity and different predicted properties. We discuss preliminary results showing how the model can convey non-ML experts with key insights into the learning model focus in the neighborhood of a molecule.

Keywords

Cite

@article{arxiv.2011.05134,
  title  = {Explaining Deep Graph Networks with Molecular Counterfactuals},
  author = {Danilo Numeroso and Davide Bacciu},
  journal= {arXiv preprint arXiv:2011.05134},
  year   = {2020}
}

Comments

6 pages, 6 figures, accepted at NeurIPS2020 Workshop on Machine Learning for Molecules

R2 v1 2026-06-23T20:02:55.869Z