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Due to the advantages of hypergraphs in modeling high-order relationships in complex systems, they have been applied to higher-order clustering, hypergraph neural networks and computer vision. These applications rely heavily on access to…

Social and Information Networks · Computer Science 2025-10-15 Bingqiao Gu , Jiale Zeng , Xingqin Qi , Dong Li

String diagrams provide an intuitive language for expressing networks of interacting processes graphically. A discrete representation of string diagrams, called string graphs, allows for mechanised equational reasoning by double-pushout…

Logic in Computer Science · Computer Science 2015-10-14 Aleks Kissinger , Vladimir Zamdzhiev

Discovering the underlying structures present in large real world graphs is a fundamental scientific problem. Recent work at the intersection of formal language theory and graph theory has found that a Hyperedge Replacement Grammar (HRG)…

Social and Information Networks · Computer Science 2017-06-30 Corey Pennycuff , Salvador Aguinaga , Tim Weninger

Large language models (LLMs) are being increasingly explored for graph tasks. Despite their remarkable success in text-based tasks, LLMs' capabilities in understanding explicit graph structures remain limited, particularly with large…

Machine Learning · Computer Science 2024-10-31 Sambhav Khurana , Xiner Li , Shurui Gui , Shuiwang Ji

We introduce bonding grammars, a graph grammar formalism developed to model DNA computation by means of graph transformations. It is a modification of fusion grammars introduced by Kreowski, Kuske and Lye in 2017. Bonding is a graph…

Formal Languages and Automata Theory · Computer Science 2024-08-07 Tikhon Pshenitsyn

Hypergraphs are generalisation of graphs in which a hyperedge can connect any number of vertices. It can describe n-ary relationships and high-order information among entities compared to conventional graphs. In this paper, we study the…

Databases · Computer Science 2023-02-21 Zhengyi Yang , Wenjie Zhang , Xuemin Lin , Ying Zhang , Shunyang Li

Large language models (LLMs) have presented significant opportunities to enhance various machine learning applications, including graph neural networks (GNNs). By leveraging the vast open-world knowledge within LLMs, we can more effectively…

Machine Learning · Computer Science 2025-02-18 Yuxia Wu , Shujie Li , Yuan Fang , Chuan Shi

We have designed a new logic programming language called LM (Linear Meld) for programming graph-based algorithms in a declarative fashion. Our language is based on linear logic, an expressive logical system where logical facts can be…

Programming Languages · Computer Science 2020-02-19 Flavio Cruz , Ricardo Rocha , Seth Copen Goldstein , Frank Pfenning

Graphs are foundational across domains but remain hard to use without deep expertise. LLMs promise accessible natural language (NL) graph analytics, yet they fail to process industry-scale property graphs effectively and efficiently: such…

Large language models (LLMs) are increasingly adopted for a variety of tasks with implicit graphical structures, such as planning in robotics, multi-hop question answering or knowledge probing, structured commonsense reasoning, and more.…

Computation and Language · Computer Science 2024-01-09 Heng Wang , Shangbin Feng , Tianxing He , Zhaoxuan Tan , Xiaochuang Han , Yulia Tsvetkov

This paper investigates complexity of the uniform membership problem for hyperedge replacement grammars in comparison with other mildly context-sensitive grammar formalisms. It turns out that the complexity of this problem depends on how…

Formal Languages and Automata Theory · Computer Science 2026-03-03 Tikhon Pshenitsyn

Many problems such as node classification and link prediction in network data can be solved using graph embeddings. However, it is difficult to use graphs to capture non-binary relations such as communities of nodes. These kinds of complex…

Social and Information Networks · Computer Science 2022-01-27 Sepideh Maleki , Donya Saless , Dennis P. Wall , Keshav Pingali

In this article we show that hybrid type-logical grammars are a fragment of first-order linear logic. This embedding result has several important consequences: it not only provides a simple new proof theory for the calculus, thereby…

Logic in Computer Science · Computer Science 2014-05-27 Richard Moot

Existing benchmarks like NLGraph and GraphQA evaluate LLMs on graphs by focusing mainly on pairwise relationships, overlooking the high-order correlations found in real-world data. Hypergraphs, which can model complex beyond-pairwise…

Artificial Intelligence · Computer Science 2024-10-17 Yifan Feng , Chengwu Yang , Xingliang Hou , Shaoyi Du , Shihui Ying , Zongze Wu , Yue Gao

Large language models have evolved to process multiple modalities beyond text, such as images and audio, which motivates us to explore how to effectively leverage them for graph reasoning tasks. The key question, therefore, is how to…

Graph-based semantic representations are valuable in natural language processing, where it is often simple and effective to represent linguistic concepts as nodes, and relations as edges between them. Several attempts has been made to find…

Formal Languages and Automata Theory · Computer Science 2021-05-10 Johanna Björklund , Frank Drewes , Anna Jonsson

Graph problems are fundamentally challenging for large language models (LLMs). While LLMs excel at processing unstructured text, graph tasks require reasoning over explicit structure, permutation invariance, and computationally complex…

Machine Learning · Computer Science 2026-04-23 Angelo Zangari , Peyman Baghershahi , Sourav Medya

Combining multiple knowledge graphs (KGs) across linguistic boundaries is a persistent challenge due to semantic heterogeneity and the complexity of graph environments. We propose a framework for cross-lingual graph fusion, leveraging the…

Computation and Language · Computer Science 2026-03-24 Kaung Myat Kyaw , Khush Agarwal , Jonathan Chan

Grammar inference deals with determining (preferable simple) models/grammars consistent with a set of observations. There is a large body of research on grammar inference within the theory of formal languages. However, there is surprisingly…

Machine Learning · Computer Science 2009-02-02 Hendrik Blockeel , Robert Brijder

In order to make more complex number-based strings from topological coding for defending against the intelligent attacks equipped with quantum computing and providing effective protection technology for the age of quantum computing, we will…

Cryptography and Security · Computer Science 2024-04-18 Bing Yao , Fei Ma