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Complex systems are usually represented as an intricate set of relations between their components forming a complex graph or network. The understanding of their functioning and emergent properties are strongly related to their structural…

Data Analysis, Statistics and Probability · Physics 2014-01-08 Sergio Gomez , Alberto Fernandez , Clara Granell , Alex Arenas

Local graph clustering methods aim to detect small clusters in very large graphs without the need to process the whole graph. They are fundamental and scalable tools for a wide range of tasks such as local community detection, node ranking…

Social and Information Networks · Computer Science 2023-06-14 Shenghao Yang , Kimon Fountoulakis

Graphs provide a natural way to represent data by encoding information about objects and the relationships between them. With the ever-increasing amount of data collected and generated, locating specific patterns of relationships between…

Data Structures and Algorithms · Computer Science 2026-04-28 Tatyana Benko , Rebecca Jones , Lucas Tate

The homotopy theory of topological defects is a powerful tool for organizing and unifying many ideas across a broad range of physical systems. Recently, experimental progress has been made in controlling and measuring colloidal inclusions…

Soft Condensed Matter · Physics 2012-04-10 Gareth P. Alexander , Bryan Gin-ge Chen , Elisabetta A. Matsumoto , Randall D. Kamien

We demonstrate an atomic force microscopy based method for estimation of defect density by identification of threading dislocations on a non-flat surface resulting from metamorphic growth. The discussed technique can be applied as an…

Materials Science · Physics 2015-06-08 Agnieszka Gocalinska , Marina Manganaro , Valeria Dimastrodonato , Emanuele Pelucchi

The structural analysis of shape boundaries leads to the characterization of objects as well as to the understanding of shape properties. The literature on graphs and networks have contributed to the structural characterization of shapes…

Computer Vision and Pattern Recognition · Computer Science 2017-11-15 Gisele H. B. Miranda , Jeaneth Machicao , Odemir M. Bruno

The nature of stacking faults - whether intrinsic or extrinsic - plays a pivotal role in defect-mediated processes in crystalline materials. Yet, current electron microscopy techniques for their reliable analysis remain limited to either…

A relational dataset is often analyzed by optimally assigning a label to each element through clustering or ordering. While similar characterizations of a dataset would be achieved by both clustering and ordering methods, the former has…

Machine Learning · Computer Science 2023-04-10 Tatsuro Kawamoto , Masaki Ochi , Teruyoshi Kobayashi

Graph based clustering is one of the major clustering methods. Most of it work in three separate steps: similarity graph construction, clustering label relaxing and label discretization with k-means. Such common practice has three…

Machine Learning · Computer Science 2019-04-26 Yudong Han , Lei Zhu , Zhiyong Cheng , Jingjing Li , Xiaobai Liu

Various methods to deal with graph data have been proposed in recent years. However, most of these methods focus on graph feature aggregation rather than graph pooling. Besides, the existing top-k selection graph pooling methods have a few…

Social and Information Networks · Computer Science 2020-02-06 Liang Zhang , Xudong Wang , Hongsheng Li , Guangming Zhu , Peiyi Shen , Ping Li , Xiaoyuan Lu , Syed Afaq Ali Shah , Mohammed Bennamoun

Multi-relational graphs (MRGs) are an expressive data structure for modeling diverse interactions/relations among real objects (i.e., nodes), which pervade extensive applications and scenarios. Given an MRG G with N nodes, partitioning the…

Machine Learning · Computer Science 2025-08-26 Xiaoyang Lin , Runhao Jiang , Renchi Yang

Graphical causal models are an important tool for knowledge discovery because they can represent both the causal relations between variables and the multivariate probability distributions over the data. Once learned, causal graphs can be…

Artificial Intelligence · Computer Science 2017-04-11 Andrew J Sedgewick , Joseph D. Ramsey , Peter Spirtes , Clark Glymour , Panayiotis V. Benos

Graph-level representations are crucial tools for characterising structural differences between graphs. However, comparing graphs with different cardinalities, even when sampled from the same underlying distribution, remains challenging.…

Machine Learning · Computer Science 2026-05-08 Katharina Limbeck , Nadja Häusermann , Martin Carrasco , Guy Wolf , Bastian Rieck

With the recent popularity of graphical clustering methods, there has been an increased focus on the information between samples. We show how learning cluster structure using edge features naturally and simultaneously determines the most…

Machine Learning · Statistics 2016-05-09 Matt Barnes , Artur Dubrawski

Computational methods that automatically extract knowledge from data are critical for enabling data-driven materials science. A reliable identification of lattice symmetry is a crucial first step for materials characterization and…

Materials Science · Physics 2018-07-19 A. Ziletti , D. Kumar , M. Scheffler , L. M. Ghiringhelli

Graphs are fundamental objects that find widespread applications across computer science and beyond. Graph Theory has yielded deep insights about structural properties of various families of graphs, which are leveraged in the design and…

Data Structures and Algorithms · Computer Science 2023-08-30 Rachit Nimavat

We study {\sc Cluster Edge Modification} problems with constraints on the size of the clusters. A graph $G$ is a cluster graph if every connected component of $G$ is a clique. In a typical {\sc Cluster Edge Modification} problem such as the…

Data Structures and Algorithms · Computer Science 2024-09-05 Jayakrishnan Madathil , Kitty Meeks

We study clustering properties of networks of single integrator nodes over a directed graph, in which the nodes converge to steady-state values. These values define clustering groups of nodes, which depend on interaction topology, edge…

Systems and Control · Electrical Eng. & Systems 2023-05-17 Jeong-Min Ma , Hyung-Gon Lee , Kevin L. Moore , Hyo-Sung Ahn , Kwang-Kyo Oh

Unsupervised clustering of wafer map defect patterns is challenging because the appearance of certain defect patterns varies significantly. This includes changing shape, location, density, and rotation of the defect area on the wafer. We…

Computer Vision and Pattern Recognition · Computer Science 2024-04-25 Alina Pleli , Simon Baeuerle , Michel Janus , Jonas Barth , Ralf Mikut , Hendrik P. A. Lensch

Defects are a ubiquitous feature of ordered media. They have certain universal features, independent of the underlying physical system, reflecting their topological origins. While the topological properties of defects are robust, they…

Soft Condensed Matter · Physics 2021-02-24 Chiqun Zhang , Amit Acharya , Alan C. Newell , Shankar C. Venkataramani