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A binary phylogenetic network may or may not be obtainable from a tree by the addition of directed edges (arcs) between tree arcs. Here, we establish a precise and easily tested criterion (based on `2-SAT') that efficiently determines…

Populations and Evolution · Quantitative Biology 2015-05-25 Andrew R. Francis , Mike Steel

The purpose of this paper is to solve the two conjectures on the largest minimum distance $d_{so}(n,5)$ of a binary self-orthogonal $[n,5]$ code proposed by Kim and Choi (IEEE Trans. Inf. Theory, 2022). The determination of $d_{so}(n,k)$…

Information Theory · Computer Science 2022-10-13 Minjia Shi , Shitao Li , Jon-Lark Kim

We investigate \Delta_n, the distance between randomly selected pairs of nodes among n keys in a random trie, which is a kind of digital tree. Analytical techniques, such as the Mellin transform and an excursion between poissonization and…

Probability · Mathematics 2007-05-23 Costas A. Christophi , Hosam M. Mahmoud

Determining the interaction partners among protein/domain families poses hard computational problems, in particular in the presence of paralogous proteins. Available approaches aim to identify interaction partners among protein/domain…

Populations and Evolution · Quantitative Biology 2015-01-14 Iman Hajirasouliha , Alexander Schönhuth , David Juan , Alfonso Valencia , S. Cenk Sahinalp

Pick a sequence of uniform points on the $d$-dimensional sphere. Then, link the $n$th point to its closest one that arrives in the past. This constructs a labelled tree called the nearest neighbour tree on the $d$-dimensional sphere. These…

Probability · Mathematics 2023-02-22 Jérôme Casse

We show that for every $\eta>0$ every sufficiently large $n$-vertex oriented graph D of minimum semidegree exceeding $(1 + \eta) k/2$ contains every balanced antidirected tree with $k$ edges and bounded maximum degree, if $k \ge \eta n$. In…

Combinatorics · Mathematics 2024-01-17 Maya Stein , Camila Zárate-Guerén

The eccentricity matrix $\varepsilon(G)$ of a graph $G$ is constructed from the distance matrix of $G$ by keeping only the largest distances for each row and each column. This matrix can be interpreted as the opposite of the adjacency…

Combinatorics · Mathematics 2021-04-26 Xiaocong He

Using a new technique, we prove a rich family of special cases of the matroid intersection conjecture. Roughly, we prove the conjecture for pairs of tame matroids which have a common decomposition by 2-separations into finite parts.

Combinatorics · Mathematics 2014-04-25 Nathan Bowler , Johannes Carmesin

This paper investigates the a-posteriori analysis of Branch-and-Bound~(BB) trees to extract structural information about the feasible region of mixed-binary linear programs. We introduce three novel outer approximations of the feasible…

Optimization and Control · Mathematics 2025-10-14 Marius Roland , Nagisa Sugishita , Alexandre Forel , Youssouf Emine , Ricardo Fukasawa , Thibaut Vidal

A dual version of a conjecture by Woodall asserts that, in a planar digraph, the length of a shortest dicycle equals the maximum number of pairwise disjoint feedback arc sets. We verify this conjecture for the case where the underlying…

Combinatorics · Mathematics 2025-09-11 Juan Gutiérrez

We prove that every oriented tree on $n$ vertices with bounded maximum degree appears as a spanning subdigraph of every directed graph on $n$ vertices with minimum semidegree at least $n/2+o(n)$. This can be seen as a directed graph…

Combinatorics · Mathematics 2026-05-20 Richard Mycroft , Tássio Naia

We study the size and structure of the largest common subtree (LCS) between two independent Bienaym\'e trees conditioned to have size $n$. When the trees are critical with finite $2$nd and $(2+\kappa)$th moment respectively for some…

Probability · Mathematics 2026-01-05 Omer Angel , Caelan Atamanchuk , Anna Brandenberger , Serte Donderwinkel , Robin Khanfir

Phylogenetic networks are a flexible model of evolution that can represent reticulate evolution and handle complex data. Tree-based networks, which are phylogenetic networks that have a spanning tree with the same root and leaf-set as the…

Combinatorics · Mathematics 2023-05-25 Takatora Suzuki , Han Guo , Momoko Hayamizu

Loebl, Komlos, and Sos conjectured that if at least half the vertices of a graph G have degree at least some k, then every tree with at most k edges is a subgraph of G. We prove the conjecture for all trees of diameter at most 5 and for a…

Combinatorics · Mathematics 2007-12-21 Diana Piguet , Maya Jakobine Stein

Trees are useful entities allowing to model data structures and hierarchical relationships in networked decision systems ubiquitously. An ordered tree is a rooted tree where the order of the subtrees (children) of a node is significant. In…

Data Structures and Algorithms · Computer Science 2020-11-10 Victor Parque , Tomoyuki Miyashita

An $r$-matching in a graph $G$ is a collection of edges in $G$ such that the distance between any two edges is at least $r$. A $2$-matching is also called an induced matching. In this paper, we estimate the maximum number of $r$-matchings…

Combinatorics · Mathematics 2014-11-18 Dong Yeap Kang , Jaehoon Kim , Younjin Kim , Hiu-Fai Law

The connective eccentricity index $\xi^{ce}=\sum^{}_{u\in V}\frac{d(u)}{\varepsilon(u)}$, where $\varepsilon(u)$ and $d(u)$ denote the eccentricity and the degree of the vertex $u$, respectively. In this paper, we first determine the…

Combinatorics · Mathematics 2017-02-20 Zikai Tang , Lingyao Jiang , Hanyuan Deng

We determine the maximal hyperplane sections of the regular $n$-simplex, if the distance of the hyperplane to the centroid is fairly large, i.e. larger than the distance of the centroid to the midpoint of edges. Similar results for the…

Functional Analysis · Mathematics 2020-02-26 Hermann König

Let $\T_{n}$ be the set of rooted labeled trees on $\set{0,...,n}$. A maximal decreasing subtree of a rooted labeled tree is defined by the maximal subtree from the root with all edges being decreasing. In this paper, we study a new…

Combinatorics · Mathematics 2022-03-22 Seunghyun Seo , Heesung Shin

The Steiner $k$-eccentricity of a vertex in graph $G$ is the maximum Steiner distance over all $k$-subsets containing the vertex. %Some general properties of the Steiner 3-eccentricity of trees are given. Let $\mathbb{T}_n$ be the set of…

Combinatorics · Mathematics 2022-05-09 Xin Liu
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