Related papers: Efficient mesh refinement for the Poisson-Boltzman…
In this paper, we solve the linearized Poisson-Boltzmann equation, used to model the electric potential of macromolecules in a solvent. We derive a corrected trapezoidal rule with improved accuracy for a boundary integral formulation of the…
Mesh sensitivity of finite element solution for linear elliptic partial differential equations is analyzed. A bound for the change in the finite element solution is obtained in terms of the mesh deformation and its gradient. The bound shows…
We formulate and analyze an adaptive algorithm for isogeometric analysis with hierarchical B-splines for weakly-singular boundary integral equations. We prove that the employed weighted-residual error estimator is reliable and converges at…
Certain Petrov-Galerkin schemes are inherently stable formulations of variational problems on a given mesh. This stability is primarily obtained by computing an optimal test basis for a given approximation space. Furthermore, these…
We prove several optimal-order error estimates for a finite-element method applied to an inhomogeneous Robin boundary value problem (BVP) for the Poisson equation defined in a smooth bounded domain in $\mathbb{R}^n$, $n=2,3$. The boundary…
This work presents a new approach to efficiently model the cathode in the moving boundary value problem of electrochemical machining. Until recently, the process simulation with finite elements had the drawback of remeshing required by the…
In a continuum model of the solvation of charged molecules in an aqueous solvent, the classical Poisson-Boltzmann (PB) theory is generalized to include the solute point charges and the dielectric boundary that separates the high-dielectric…
In this paper, based on the combination of finite element mesh and neural network, a novel type of neural network element space and corresponding machine learning method are designed for solving partial differential equations. The…
For the Poisson equation posed in a domain containing a large number of polygonal perforations, we propose a low-dimensional coarse approximation space based on a coarse polygonal partitioning of the domain. Similarly to other multiscale…
In this work, we bridge standard adaptive mesh refinement and coarsening on scalable octree background meshes and robust unfitted finite element formulations for the automatic and efficient solution of large-scale nonlinear solid mechanics…
We develop all of the components needed to construct an adaptive finite element code that can be used to approximate fractional partial differential equations, on non-trivial domains in $d\geq 1$ dimensions. Our main approach consists of…
Finite Element Exterior Calculus (FEEC) was developed by Arnold, Falk, Winther and others over the last decade to exploit the observation that mixed variational problems can be posed on a Hilbert complex, and Galerkin-type mixed methods can…
The use of boundary integral equations in modeling boundary value problems-such as elastic, acoustic, or electromagnetic ones-is well established in the literature and widespread in practical applications. These equations are typically…
This work reviews goal-oriented a posteriori error control, adaptivity and solver control for finite element approximations to boundary and initial-boundary value problems for stationary and non-stationary partial differential equations,…
In the context of adaptive remeshing, the virtual element method provides significant advantages over the finite element method. The attractive features of the virtual element method, such as the permission of arbitrary element geometries,…
The solution of the wave equation in a polyhedral domain in $\mathbb{R}^3$ admits an asymptotic singular expansion in a neighborhood of the corners and edges. In this article we formulate boundary and screen problems for the wave equation…
In computational biochemistry and biophysics, understanding the role of electrostatic interactions is crucial for elucidating the structure, dynamics, and function of biomolecules. The Poisson-Boltzmann (PB) equation is a foundational tool…
Accurately modeling bending energy in morphogenetic simulations is crucial, especially when dealing with anisotropic meshes where remeshing is infeasible due to the biologically meaningful entities of vertex positions (e.g., cells). This…
Multi-element wings are popular in the aerospace community due to their high lift performance. Turbulent flow simulations of these configurations require very fine mesh spacings especially near the walls, thereby making use of a boundary…
We prove that for compactly perturbed elliptic problems, where the corresponding bilinear form satisfies a Garding inequality, adaptive mesh-refinement is capable of overcoming the preasymptotic behavior and eventually leads to convergence…