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Embedding and visualizing large-scale high-dimensional data in a two-dimensional space is an important problem since such visualization can reveal deep insights out of complex data. Most of the existing embedding approaches, however, run on…

Machine Learning · Computer Science 2017-03-06 Minjeong Kim , Minsuk Choi , Sunwoong Lee , Jian Tang , Haesun Park , Jaegul Choo

This is a tutorial and survey paper for Locally Linear Embedding (LLE) and its variants. The idea of LLE is fitting the local structure of manifold in the embedding space. In this paper, we first cover LLE, kernel LLE, inverse LLE, and…

Machine Learning · Statistics 2020-11-24 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

In this paper, we carry out numerical analysis to prove convergence of a novel sample-wise back-propagation method for training a class of stochastic neural networks (SNNs). The structure of the SNN is formulated as discretization of a…

Numerical Analysis · Mathematics 2022-12-20 Richard Archibald , Feng Bao , Yanzhao Cao , Hui Sun

This study presents a pipeline leveraging t-Distributed Stochastic Neighbor Embedding (t-SNE) for interpretable visualizations of chirp features across diverse outcome scenarios. The dataset, comprising chirp-based temporal, spectral, and…

Machine Learning · Computer Science 2025-08-20 Nooshin Bahador , Milad Lankarany

Multidimensional scaling is a statistical process that aims to embed high dimensional data into a lower-dimensional space; this process is often used for the purpose of data visualisation. Common multidimensional scaling algorithms tend to…

Machine Learning · Computer Science 2022-02-25 Pierre Lambert , Cyril de Bodt , Michel Verleysen , John Lee

t-SNE is a popular tool for embedding multi-dimensional datasets into two or three dimensions. However, it has a large computational cost, especially when the input data has many dimensions. Many use t-SNE to embed the output of a neural…

Machine Learning · Computer Science 2019-12-04 Rikhav Shah , Sandeep Silwal

Most existing graph visualization methods based on dimension reduction are limited to relatively small graphs due to performance issues. In this work, we propose a novel dimension reduction method for graph visualization, called…

Machine Learning · Computer Science 2023-10-18 Xinyu Li , Yao Xiao , Yuchen Zhou

Analyzing high-dimensional data with manifold learning algorithms often requires searching for the nearest neighbors of all observations. This presents a computational bottleneck in statistical manifold learning when observations of…

Machine Learning · Computer Science 2022-03-11 Fan Cheng , Anastasios Panagiotelis , Rob J Hyndman

In this paper we propose a new sampling-free approach to solve Bayesian model inversion problems that is an extension of the previously proposed spectral likelihood expansions (SLE) method. Our approach, called stochastic spectral…

Computation · Statistics 2021-04-21 P. -R. Wagner , S. Marelli , B. Sudret

We describe a new method called t-ETE for finding a low-dimensional embedding of a set of objects in Euclidean space. We formulate the embedding problem as a joint ranking problem over a set of triplets, where each triplet captures the…

Artificial Intelligence · Computer Science 2017-05-18 Ehsan Amid , Nikos Vlassis , Manfred K. Warmuth

Conditional t-SNE (ct-SNE) is a recent extension to t-SNE that allows removal of known cluster information from the embedding, to obtain a visualization revealing structure beyond label information. This is useful, for example, when one…

Machine Learning · Computer Science 2023-04-12 Edith Heiter , Bo Kang , Ruth Seurinck , Jefrey Lijffijt

In contrast to classical techniques for exploratory analysis of high-dimensional data sets, such as principal component analysis (PCA), neighbor embedding (NE) techniques tend to better preserve the local structure/topology of…

Machine Learning · Statistics 2022-09-07 Roman Josef Rainer , Michael Mayr , Johannes Himmelbauer , Ramin Nikzad-Langerodi

t-distributed Stochastic Neighborhood Embedding (t-SNE), a clustering and visualization method proposed by van der Maaten & Hinton in 2008, has rapidly become a standard tool in a number of natural sciences. Despite its overwhelming…

Machine Learning · Computer Science 2017-06-09 George C. Linderman , Stefan Steinerberger

The central goal of this paper is to establish two commonly available dimensionality reduction (DR) methods i.e. t-distributed Stochastic Neighbor Embedding (t-SNE) and Multidimensional Scaling (MDS) in Matlab and to observe their…

Machine Learning · Computer Science 2020-11-19 Shadman Sakib , Md. Abu Bakr Siddique , Md. Abdur Rahman

Running machine learning analytics over geographically distributed datasets is a rapidly arising problem in the world of data management policies ensuring privacy and data security. Visualizing high dimensional data using tools such as…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-13 Viska Wei , Nikita Ivkin , Vladimir Braverman , Alexander Szalay

The t-Distributed Stochastic Neighbor Embedding (t-SNE) has emerged as a popular dimensionality reduction technique for visualizing high-dimensional data. It computes pairwise similarities between data points by default using an RBF kernel…

Machine Learning · Computer Science 2024-10-22 Sarwan Ali , Prakash Chourasia , Haris Mansoor , Bipin koirala , Murray Patterson

Locally Linear Embedding (LLE) is a nonlinear spectral dimensionality reduction and manifold learning method. It has two main steps which are linear reconstruction and linear embedding of points in the input space and embedding space,…

Machine Learning · Statistics 2021-04-06 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

This paper presents a new insight into improving the performance of Stochastic Neighbour Embedding (t-SNE) by using Isolation kernel instead of Gaussian kernel. Isolation kernel outperforms Gaussian kernel in two aspects. First, the use of…

Machine Learning · Computer Science 2024-01-30 Ye Zhu , Kai Ming Ting

In recent years, hyperspectral imaging, also known as imaging spectroscopy, has been paid an increasing interest in geoscience and remote sensing community. Hyperspectral imagery is characterized by very rich spectral information, which…

Computer Vision and Pattern Recognition · Computer Science 2020-07-20 Danfeng Hong , Jing Yao , Xin Wu , Jocelyn Chanussot , Xiao Xiang Zhu

Generative Adversarial Networks (GANs) are powerful generative models that achieved strong results, mainly in the image domain. However, the training of GANs is not trivial, presenting some challenges tackled by different strategies.…

Neural and Evolutionary Computing · Computer Science 2021-02-26 Victor Costa , Nuno Lourenço , João Correia , Penousal Machado