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t-Distributed Stochastic Neighbor Embedding (t-SNE) is one of the most widely used dimensionality reduction methods for data visualization, but it has a perplexity hyperparameter that requires manual selection. In practice, proper tuning of…

Artificial Intelligence · Computer Science 2017-08-11 Yanshuai Cao , Luyu Wang

Neighbor Embedding (NE) aims to preserve pairwise similarities between data items and has been shown to yield an effective principle for data visualization. However, even the best existing NE methods such as Stochastic Neighbor Embedding…

Machine Learning · Computer Science 2021-09-15 Zhirong Yang , Yuwei Chen , Denis Sedov , Samuel Kaski , Jukka Corander

T-SNE is a well-known approach to embedding high-dimensional data and has been widely used in data visualization. The basic assumption of t-SNE is that the data are non-constrained in the Euclidean space and the local proximity can be…

Machine Learning · Computer Science 2015-08-06 Mian Wang , Dong Wang

Across many scientific fields, measurements often represent the number of times an event occurs. For example, a document can be represented by word occurrence counts, neural activity by spike counts per time window, or online communication…

Machine Learning · Statistics 2026-04-21 Noga Mudrik , Adam S. Charles

Parametric embedding methods such as parametric t-SNE (pt-SNE) have been widely adopted for data visualization and out-of-sample data embedding without further computationally expensive optimization or approximation. However, the…

Machine Learning · Computer Science 2018-04-24 Martin Renqiang Min , Hongyu Guo , Dinghan Shen

This paper presents a kernelized version of the t-SNE algorithm, capable of mapping high-dimensional data to a low-dimensional space while preserving the pairwise distances between the data points in a non-Euclidean metric. This can be…

Machine Learning · Computer Science 2023-11-22 Denis C. Ilie-Ablachim , Bogdan Dumitrescu , Cristian Rusu

Non-linear dimensionality reduction can be performed by \textit{manifold learning} approaches, such as Stochastic Neighbour Embedding (SNE), Locally Linear Embedding (LLE) and Isometric Feature Mapping (ISOMAP). These methods aim to produce…

Machine Learning · Statistics 2021-12-09 Theodoulos Rodosthenous , Vahid Shahrezaei , Marina Evangelou

We extend a well-known dimension reduction method, t-distributed stochastic neighbor embedding (t-SNE), from non-parametric to parametric by training neural networks. The main advantage of a parametric technique is the generalization of…

Machine Learning · Computer Science 2020-10-01 Chien-Hsun Lai , Yu-Shuen Wang

Manifold learning now plays a very important role in machine learning and many relevant applications. Although its superior performance in dealing with nonlinear data distribution, data sparsity is always a thorny knot. There are few…

Machine Learning · Computer Science 2019-09-17 Shenglan Liu , Yang Yu , Yang Liu , Hong Qiao , Lin Feng , Jiashi Feng

Feature representation is an important aspect of remote-sensing based image classification. While deep convolutional neural networks are able to effectively amalgamate information, large numbers of parameters often make learned features…

Machine Learning · Computer Science 2022-03-07 Joshua Peeples , Sarah Walker , Connor McCurley , Alina Zare , James Keller , Weihuang Xu

In deep neural nets, lower level embedding layers account for a large portion of the total number of parameters. Tikhonov regularization, graph-based regularization, and hard parameter sharing are approaches that introduce explicit biases…

Machine Learning · Computer Science 2020-10-06 Liwei Wu , Shuqing Li , Cho-Jui Hsieh , James Sharpnack

High-dimensional imaging is becoming increasingly relevant in many fields from astronomy and cultural heritage to systems biology. Visual exploration of such high-dimensional data is commonly facilitated by dimensionality reduction.…

Computer Vision and Pattern Recognition · Computer Science 2023-08-04 Alexander Vieth , Anna Vilanova , Boudewijn Lelieveldt , Elmar Eisemann , Thomas Höllt

t-distributed stochastic neighbor embedding (t-SNE) is a well-established visualization method for complex high-dimensional data. However, the original t-SNE method is nonparametric, stochastic, and often cannot well prevserve the global…

Computer Vision and Pattern Recognition · Computer Science 2022-01-14 Zixia Zhou , Yuanyuan Wang , Boudewijn P. F. Lelieveldt , Qian Tao

This paper proposes a novel acoustic word embedding called Acoustic Neighbor Embeddings where speech or text of arbitrary length are mapped to a vector space of fixed, reduced dimensions by adapting stochastic neighbor embedding (SNE) to…

Audio and Speech Processing · Electrical Eng. & Systems 2022-01-10 Woojay Jeon

Neighbor embeddings are a family of methods for visualizing complex high-dimensional datasets using $k$NN graphs. To find the low-dimensional embedding, these algorithms combine an attractive force between neighboring pairs of points with a…

Machine Learning · Computer Science 2024-06-06 Jan Niklas Böhm , Philipp Berens , Dmitry Kobak

Multimodal relational data analysis has become of increasing importance in recent years, for exploring across different domains of data, such as images and their text tags obtained from social networking services (e.g., Flickr). A variety…

Machine Learning · Computer Science 2020-05-05 Morihiro Mizutani , Akifumi Okuno , Geewook Kim , Hidetoshi Shimodaira

A fundamental task in machine learning involves visualizing high-dimensional data sets that arise in high-impact application domains. When considering the context of large imbalanced data, this problem becomes much more challenging. In this…

Machine Learning · Computer Science 2021-09-21 Parisa Hajibabaee , Farhad Pourkamali-Anaraki , Mohammad Amin Hariri-Ardebili

Dimensionality reduction and manifold learning methods such as t-Distributed Stochastic Neighbor Embedding (t-SNE) are routinely used to map high-dimensional data into a 2-dimensional space to visualize and explore the data. However, two…

Machine Learning · Computer Science 2019-05-27 Bo Kang , Darío García García , Jefrey Lijffijt , Raúl Santos-Rodríguez , Tijl De Bie

Deep neural networks often require copious amount of labeled-data to train their scads of parameters. Training larger and deeper networks is hard without appropriate regularization, particularly while using a small dataset. Laterally,…

Computer Vision and Pattern Recognition · Computer Science 2019-05-31 Xiang Xu , Xiong Zhou , Ragav Venkatesan , Gurumurthy Swaminathan , Orchid Majumder

Central to the widespread use of t-distributed stochastic neighbor embedding (t-SNE) is the conviction that it produces visualizations whose structure roughly matches that of the input. To the contrary, we prove that (1) the strength of the…

Machine Learning · Computer Science 2026-03-03 Noah Bergam , Szymon Snoeck , Nakul Verma