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We study large-scale distributed cooperative systems that use optimistic replication. We represent a system as a graph of actions (operations) connected by edges that reify semantic constraints between actions. Constraint types include…

Databases · Computer Science 2007-10-08 Pierre Sutra , Marc Shapiro , João Pedro Barreto

Reverse engineering of protocol message formats is critical for many security applications. Mainstream techniques use dynamic analysis and inherit its low-coverage problem -- the inferred message formats only reflect the features of their…

Cryptography and Security · Computer Science 2024-07-02 Qingkai Shi , Xiangzhe Xu , Xiangyu Zhang

Protocells are supposed to have played a key role in the self-organizing processes leading to the emergence of life. Existing models either (i) describe protocell architecture and dynamics, given the existence of sets of collectively…

Molecular Networks · Quantitative Biology 2014-08-01 Roberto Serra , Alessandro Filisetti , Marco Villani , Alex Graudenzi , Chiara Damiani , Tommaso Panini

The application of the quasi-steady-state approximation to the Michaelis-Menten reaction embedded in large open chemical reaction networks is a popular model reduction technique in deterministic and stochastic simulations of biochemical…

Statistical Mechanics · Physics 2013-05-28 Philipp Thomas , Arthur V. Straube , Ramon Grima

Populations are made up of an integer number of individuals and are subject to stochastic birth-death processes whose rates may vary in time. Useful quantities, like the chance of ultimate fixation, satisfy an appropriate difference…

Populations and Evolution · Quantitative Biology 2020-07-22 Jayant Pande , Nadav M. Shnerb

Agent-based models of disease transmission involve stochastic rules that specify how a number of individuals would infect one another, recover or be removed from the population. Common yet stringent assumptions stipulate interchangeability…

Computation · Statistics 2021-01-29 Nianqiao Ju , Jeremy Heng , Pierre E. Jacob

Nuclear coherent population transfer (NCPT) plays an important role in the exploration and application of atomic nuclei. How to achieve high-fidelity NCPT remains so far challenging. Here, we investigate the complete population transfer of…

Nuclear Theory · Physics 2024-11-01 Ying Wang , Fu-Quan Dou

We study the possibility of creating a coherent population trapping (CPT) state, involving free atomic and ground molecular condensates, during the process of associating atomic condensate into molecular condensate. We generalize the…

Other Condensed Matter · Physics 2009-11-11 Hong Y. Ling , Peter Maenner , Han Pu

Analysis of large continuous-time stochastic systems is a computationally intensive task. In this work we focus on population models arising from chemical reaction networks (CRNs), which play a fundamental role in analysis and design of…

Systems and Control · Computer Science 2019-05-27 Milan Češka , Jan Křetínský

There is growing consensus that language model (LM) developers should not be the sole deciders of LM behavior, creating a need for methods that enable the broader public to collectively shape the behavior of LM systems that affect them. To…

Artificial Intelligence · Computer Science 2024-06-13 Saffron Huang , Divya Siddarth , Liane Lovitt , Thomas I. Liao , Esin Durmus , Alex Tamkin , Deep Ganguli

We consider concurrent systems consisting of a finite but unknown number of components, that are replicated instances of a given set of finite state automata. The components communicate by executing interactions which are simultaneous…

Formal Languages and Automata Theory · Computer Science 2019-02-08 Marius Bozga , Radu Iosif , Joseph Sifakis

Many quantum algorithms can be seen as a transition from a well-defined initial quantum state of a complex quantum system, to an unknown target quantum state, corresponding to a certain eigenvalue either of the Hamiltonian or of a…

Quantum Physics · Physics 2022-07-19 Aikaterini Mandilara , Daniil Fedotov , Vladimir M. Akulin

When individuals in a population can be classified in classes or categories, the coverage of a sample, $C$, is defined as the probability that a randomly selected individual from the population belongs to a class represented in the sample.…

Computation · Statistics 2025-04-08 Carlos Hernandez-Suarez

Collective adaptive systems are new emerging computational systems consisting of a large number of interacting components and featuring complex behaviour. These systems are usually distributed, heterogeneous, decentralised and…

Programming Languages · Computer Science 2017-11-30 Yehia Abd Alrahman , Rocco De Nicola , Michele Loreti

Multi-agent systems cooperation to achieve global goals is usually limited by sensing, actuation, and communication issues. At the local level, continuous measurement and actuation is only approximated by the use of digital mechanisms that…

Optimization and Control · Mathematics 2016-11-18 Eloy Garcia , Yongcan Cao , David W. Casbeer

We show that a maximum likelihood approach for parameter estimation in agent-based models (ABMs) of opinion dynamics outperforms the typical simulation-based approach. Simulation-based approaches simulate the model repeatedly in search of a…

Social and Information Networks · Computer Science 2023-10-06 Jacopo Lenti , Corrado Monti , Gianmarco De Francisci Morales

A specific family of point processes are introduced that allow to select samples for the purpose of estimating the mean or the integral of a function of a real variable. These processes, called quasi-systematic processes, depend on a tuning…

Methodology · Statistics 2016-07-19 Matthieu Wilhelm , Yves Tillé , Lionel Qualité

This paper introduces a method for predicting the likely behaviors of continuous nonlinear systems in equilibrium in which the input values can vary. The method uses a parameterized equation model and a lower bound on the input joint…

Systems and Control · Computer Science 2013-04-10 Alexander Yeh

Angluin et al. proved that population protocols compute exactly the predicates definable in Presburger arithmetic (PA), the first-order theory of addition. As part of this result, they presented a procedure that translates any formula…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-01-14 Michael Blondin , Javier Esparza , Blaise Genest , Martin Helfrich , Stefan Jaax

It has been recently observed that the dynamical properties of mass action systems arising from many models of biochemical reaction networks can be derived by considering the corresponding properties of a related generalized mass action…

Numerical Analysis · Mathematics 2014-07-22 Matthew D. Johnston