Related papers: A Normal Sequence Compressed by PPM$^*$ but not by…
We present a simple adaptation of the Lempel Ziv 78' (LZ78) compression scheme ({\em IEEE Transactions on Information Theory, 1978}) that supports efficient random access to the input string. Namely, given query access to the compressed…
Sequential probability assignment and universal compression go hand in hand. We propose sequential probability assignment for non-binary (and large alphabet) sequences with empirical distributions whose parameters are known to be bounded…
Lempel-Ziv is an easy-to-compute member of a wide family of so-called macro schemes; it restricts pointers to go in one direction only. Optimal bidirectional macro schemes are NP-complete to find, but they may provide much better…
Lossless data compression has been widely studied in computer science. One of the most widely used lossless data compressions is Lempel-Zip(LZ) 77 parsing, which achieves a high compression ratio. Bidirectional (a.k.a. macro) parsing is a…
A family of Lempel-Ziv factorizations is a well-studied string structure. The LZ-End factorization is a member of the family that achieved faster extraction of any substrings (Kreft & Navarro, TCS 2013). One of the interests for LZ-End…
Relative Lempel-Ziv (RLZ) is a popular algorithm for compressing databases of genomes from individuals of the same species when fast random access is desired. With Kuruppu et al.'s (SPIRE 2010) original implementation, a reference genome is…
Computation on compressed strings is one of the key approaches to processing massive data sets. We consider local subsequence recognition problems on strings compressed by straight-line programs (SLP), which is closely related to…
Compression refers to encoding data using bits, so that the representation uses as few bits as possible. Compression could be lossless: i.e. encoded data can be recovered exactly from its representation) or lossy where the data is…
We present a new algorithm for computing the Lempel-Ziv Factorization (LZ77) of a given string of length $N$ in linear time, that utilizes only $N\log N + O(1)$ bits of working space, i.e., a single integer array, for constant size integer…
Compression techniques that support fast random access are a core component of any information system. Current state-of-the-art methods group documents into fixed-sized blocks and compress each block with a general-purpose adaptive…
This paper is concerned with algorithms for prediction of discrete sequences over a finite alphabet, using variable order Markov models. The class of such algorithms is large and in principle includes any lossless compression algorithm. We…
In this paper, a fully compressed pattern matching problem is studied. The compression is represented by straight-line programs (SLPs), i.e. a context-free grammars generating exactly one string; the term fully means that both the pattern…
The Sliding Window Lempel-Ziv (SWLZ) algorithm that makes use of recurrence times and match lengths has been studied from various perspectives in information theory literature. In this paper, we undertake a finer study of these quantities…
The Sliding Window Lempel-Ziv (SWLZ) algorithm has been studied from various perspectives in information theory literature. In this paper, we provide a general law which defines the asymptotics of match length for stationary and ergodic…
Consider the case where consecutive blocks of N letters of a semi-infinite individual sequence X over a finite-alphabet are being compressed into binary sequences by some one-to-one mapping. No a-priori information about X is available at…
The compression-complexity trade-off of lossy compression algorithms that are based on a random codebook or a random database is examined. Motivated, in part, by recent results of Gupta-Verd\'{u}-Weissman (GVW) and their underlying…
Much research has been devoted to optimizing algorithms of the Lempel-Ziv (LZ) 77 family, both in terms of speed and memory requirements. Binary search trees and suffix trees (ST) are data structures that have been often used for this…
In the field of biological research, it is essential to comprehend the characteristics and functions of molecular sequences. The classification of molecular sequences has seen widespread use of neural network-based techniques. Despite their…
Advances in DNA sequencing technology will soon result in databases of thousands of genomes. Within a species, individuals' genomes are almost exact copies of each other; e.g., any two human genomes are 99.9% the same. Relative Lempel-Ziv…
The majority of online content is written in languages other than English, and is most commonly encoded in UTF-8, the world's dominant Unicode character encoding. Traditional compression algorithms typically operate on individual bytes.…